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35 Open 131 Closed
35 Open 131 Closed
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Issues list

Configure trimmomatic threads
#277 opened Oct 2, 2019 by averagehat
Numpy Import Error
#276 opened Feb 28, 2019 by averagehat
Large gzip file crashes convert_formats
#275 opened Aug 8, 2018 by averagehat
misleading graphics output when running a concatenated reference file
#274 opened Dec 12, 2017 by figueroakl
11
Mapped Read Count
#272 opened Nov 13, 2017 by averagehat
1
missing dependency: libpng12-devel
#268 opened Aug 10, 2017 by averagehat
modifying the path to root of data structure with PC download/install
#267 opened Mar 28, 2017 by figueroakl
5
mapper graph doesn't match # reads
#265 opened Feb 23, 2017 by InaMBerry
1
Add lofreq option
#264 opened Feb 6, 2017 by averagehat
Installation problems
#263 opened Nov 4, 2016 by averagehat
Optionally remove duplicates
#262 opened Nov 4, 2016 by averagehat
Warn user if config file is wrong version/missing key
#256 opened Aug 12, 2016 by averagehat
Some docs outdated & some doc links broken
#253 opened Jul 14, 2016 by averagehat
2
montage won't detect correct font
#252 opened Jun 29, 2016 by averagehat
add PCR error filter
#251 opened Jun 7, 2016 by mmelendrez
1
Graphsample output shows gap where there isn't one
#250 opened Apr 26, 2016 by averagehat
convert_format permissions issues bug in progress
#232 opened Apr 6, 2016 by necrolyte2
@averagehat
Easily create ReadsBySample enhancement ready
#231 opened Mar 31, 2016 by necrolyte2 AFRIMS Issues
1
Consider Continous Delivery in progress
#225 opened Mar 28, 2016 by averagehat
3
read duplication in progress Needs Discussion
#217 opened Mar 24, 2016 by necrolyte2 AFRIMS Issues
4
Should samplesheet support absolute path to data? question
#211 opened Mar 23, 2016 by necrolyte2 AFRIMS Issues
3
Log files contain no useful information for debugging
#206 opened Mar 23, 2016 by necrolyte2 AFRIMS Issues
4
trimmed_reads directory contains filenames that start with filtered in progress question
#205 opened Mar 23, 2016 by necrolyte2 AFRIMS Issues
@averagehat
1
pyBWA trying to install bwa even though it should exist bug
#200 opened Mar 21, 2016 by necrolyte2
1
Documentation references runsample-output-directory that does not exist Documentation
#198 opened Mar 21, 2016 by necrolyte2
ProTip! Updated in the last three days: updated:>2024-12-01.