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@DIAGNijmegen Diagnostic Image Analysis Group

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    157 repositories

    • nnUNet-for-pathology

      Public
      Adapted nnUNet framework with additional features to suit the requirements for pathology applications
      Python
      •
      Apache License 2.0
      •1.8k•10•0•0•Updated Nov 22, 2024Nov 22, 2024

    • LEOPARD-challenge-baseline

      Public
      Python
      •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

    • pathology-whole-slide-data

      Public
      A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
      pythondeep-learningiteratorwsdpathologywhole-slide-imagingwsicomputational-pathologywsmwsa
      Python
      •
      Apache License 2.0
      •27•93•4•1•Updated Nov 21, 2024Nov 21, 2024

    • website-content

      Public
      This repository stores all the content for the diag websites.
      TeX
      •
      MIT License
      •75•6•27•14•Updated Nov 21, 2024Nov 21, 2024

    • rse-gcapi

      Public
      Python client for the grand-challenge.org API
      Python
      •
      Apache License 2.0
      •3•2•7•2•Updated Nov 20, 2024Nov 20, 2024

    • bodyct-sybil-lung-cancer-risk-2

      Public
      Deep Learning for Lung Cancer Risk Prediction using LDCT
      Python
      •
      MIT License
      •42•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • rse-pyswot

      Public
      Python implementation of JetBrains/swot
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Nov 19, 2024Nov 19, 2024

    • rse-grand-challenge-forge

      Public
      Generation of challenge packs
      Python
      •
      Apache License 2.0
      •0•0•4•0•Updated Nov 18, 2024Nov 18, 2024

    • Literature

      Public
      The literature generated and cited by the group
      TeX
      •3•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • QualityClassifier

      Public
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • cobra-streamingclam

      Public
      Lightstream implementation of the StreamingCLAM model
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • demo-algorithm-template

      Public
      A demo algorithm template
      Shell
      •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

    • picai_eval

      Public
      Evaluation of 3D detection and diagnosis performance —geared towards prostate cancer detection in MRI.
      detectionrocdiagnosisprecision-recallfrocmetricsevaluation
      Python
      •
      Apache License 2.0
      •9•20•1•0•Updated Nov 1, 2024Nov 1, 2024

    • rse-workshop-2024

      Public
      Files for the Challenge-Hosting Masterclass (https://workshop2024.grand-challenge.org/)
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • dragon_prep

      Public
      Preprocessing scripts for the DRAGON benchmark
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • panorama_labels

      Public
      Other
      •2•6•1•0•Updated Oct 24, 2024Oct 24, 2024

    • dinov2

      Public
      Adaption of DINOv2 for computational pathology
      Python
      •829•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • rse-panimg

      Public
      Conversion of medical images to MHA and TIFF.
      Python
      •
      Apache License 2.0
      •5•13•5•0•Updated Oct 18, 2024Oct 18, 2024

    • picai_prep

      Public
      Preprocessing 3D medical images and image archives —geared towards prostate cancer detection in MRI.
      datasetsmhaimage-archivesdicommedical-imaging
      Python
      •
      Apache License 2.0
      •5•19•0•0•Updated Oct 17, 2024Oct 17, 2024

    • deepops

      Public
      Tools for building GPU clusters
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •332•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • rse-sagemaker-shim

      Public
      Adapts algorithms that implement the Grand Challenge inference API for running in SageMaker
      sagemakergrand-challenge
      Python
      •
      Apache License 2.0
      •0•1•4•0•Updated Oct 16, 2024Oct 16, 2024

    • dragon_baseline

      Public
      Baseline training algorithm for the DRAGON challenge (dragon.grand-challenge.org)
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 8, 2024Oct 8, 2024

    • dragon_eval

      Public
      Evaluation method for the DRAGON challenge (dragon.grand-challenge.org)
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 7, 2024Oct 7, 2024

    • pathology-tiger-algorithm-example

      Public
      Example algorithm and docker for the TIGER challenge
      Python
      •
      MIT License
      •6•8•1•0•Updated Oct 2, 2024Oct 2, 2024

    • bodyct-sybil-lung-cancer-risk

      Public
      Fork of the original Sybil repo, with adjustments by Fennie van der Graaf
      Python
      •
      MIT License
      •42•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • rse-cirrus-benchmark-suite

      Public
      A small playwright-based CIRRUS benchmark suite, meant to detect speedups or slowdowns.
      grand-challenge
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •917•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • pathology-hooknet

      Public
      Jupyter Notebook
      •
      MIT License
      •10•53•4•0•Updated Sep 23, 2024Sep 23, 2024

    • picai_labels

      Public
      Annotations for the PI-CAI Challenge: Public Training and Development Dataset
      Other
      •24•49•0•0•Updated Sep 19, 2024Sep 19, 2024

    • MultiStainDeepLearning

      Public
      Code from Foersch et al. (Under Construction / Development)
      Python
      •
      GNU General Public License v3.0
      •10•0•0•0•Updated Sep 10, 2024Sep 10, 2024