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@DIAGNijmegen

Diagnostic Image Analysis Group

Popular repositories Loading

  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 106 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 98 22

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 93 27

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 75 10

  5. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 53 10

  6. pathology-he-auto-augment pathology-he-auto-augment Public

    H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

    Python 51 7

Repositories

Showing 10 of 157 repositories
  • dragon_prep Public

    Preprocessing scripts for the DRAGON benchmark

    DIAGNijmegen/dragon_prep’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 26, 2024
  • Literature Public

    The literature generated and cited by the group

    DIAGNijmegen/Literature’s past year of commit activity
    TeX 0 3 0 0 Updated Nov 26, 2024
  • DIAGNijmegen/pathology-hooknet-tls’s past year of commit activity
    Jupyter Notebook 12 MIT 2 10 0 Updated Nov 26, 2024
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 75 27 (1 issue needs help) 14 Updated Nov 26, 2024
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Nov 26, 2024
  • pathology-whole-slide-learning Public

    library for weak whole slide learning with attention to compress and classify whole slide images

    DIAGNijmegen/pathology-whole-slide-learning’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Nov 25, 2024
  • nnUNet-for-pathology Public Forked from MIC-DKFZ/nnUNet

    Adapted nnUNet framework with additional features to suit the requirements for pathology applications

    DIAGNijmegen/nnUNet-for-pathology’s past year of commit activity
    Python 10 Apache-2.0 1,783 0 0 Updated Nov 22, 2024
  • DIAGNijmegen/LEOPARD-challenge-baseline’s past year of commit activity
    Python 1 0 0 0 Updated Nov 22, 2024
  • pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    DIAGNijmegen/pathology-whole-slide-data’s past year of commit activity
    Python 93 Apache-2.0 27 4 1 Updated Nov 21, 2024
  • rse-gcapi Public

    Python client for the grand-challenge.org API

    DIAGNijmegen/rse-gcapi’s past year of commit activity
    Python 2 Apache-2.0 3 6 2 Updated Nov 20, 2024