Big Life Lab

All

27 repositories

PHES-ODM-Validation
Public
A toolkit to assist in validating whether data conforms to the PHES-ODM dictionary.
phes-odm validation validator
Python
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Creative Commons Attribution 4.0 International
•0•5•38•4•Updated Nov 14, 2024Nov 14, 2024
PHES-ODM-sharing
Public
Python
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Other
•0•0•6•0•Updated Nov 13, 2024Nov 13, 2024
recodeflow
Public
Harmonizing data into a common format.
R
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Other
•1•6•11•2•Updated Nov 4, 2024Nov 4, 2024
PHES-ODM
Public
The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.
metadata naming-conventions vocabulary odm data-dictionary wastewater covid19 sars-cov-2 covid-19
Python
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Creative Commons Attribution Share Alike 4.0 International
•18•54•4•3•Updated Oct 29, 2024Oct 29, 2024
PHES-ODM-Doc
Public
The documentation website for Public Health Environmental Surveillance Open Data Model (PHES-ODM).
odm documentation-generator documentation-website quarto phes-odm documentation
R
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Creative Commons Attribution 4.0 International
•0•2•9•3•Updated Oct 29, 2024Oct 29, 2024
predictive-algorithms
Public
R
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Other
•8•17•0•0•Updated Oct 23, 2024Oct 23, 2024
PHES-EF
Public
Public Health Environmental Surveillance - Evaluation Framework
Lua
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Other
•1•1•0•1•Updated Sep 11, 2024Sep 11, 2024
pmml
Public
Code for producing PMML documents (originally stored in Big-Life-Lab/recodeflow)
R
•0•0•0•0•Updated Aug 30, 2024Aug 30, 2024
popcorn-web
Public
Population Health Modelling Consensus Reporting Network (POPCORN-NCD), an internationally agreed-upon reporting guideline for NCD modeling studies.
reporting guidelines equator modelling-studies noncommicable-disease
Lua
•0•0•0•0•Updated Jun 18, 2024Jun 18, 2024
local-transformations-generator
Public archive
R
•0•0•2•0•Updated May 16, 2024May 16, 2024
PHES-ODM-Map
Public
Transform data from various database formats to ODM.
0•1•0•2•Updated Mar 8, 2024Mar 8, 2024
cchsflow
Public
Variable transformation and harmonization for the Canadian Community Health Survey
r openscience opensci cchs
R
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Other
•7•12•6•4•Updated Feb 20, 2024Feb 20, 2024
elderflow
Public
What the Package Does (One Line, Title Case)
R
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Other
•0•0•9•0•Updated Nov 1, 2023Nov 1, 2023
PHES-ODM-action-testing
Public
Fork of PHES-ODM to test github actions.
R
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Creative Commons Attribution Share Alike 4.0 International
•18•0•0•1•Updated Oct 24, 2023Oct 24, 2023
deepROC
Public
Python
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Apache License 2.0
•0•6•3•0•Updated Feb 19, 2023Feb 19, 2023
covidprojections
Public
R
•0•0•1•0•Updated Feb 11, 2023Feb 11, 2023
bllflow
Public
Big Life Lab Flow (BLLFlow) - a workflow for open, reproducible research. Includes support for PMML, DDI.
r ddi pmml ddi-codebook opensci
R
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Other
•1•11•3•5•Updated Jan 6, 2023Jan 6, 2023
partial-AUC-C
Public
Code for the concordant partial AUC and the partial C statistic
Python
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Apache License 2.0
•1•1•1•0•Updated May 17, 2022May 17, 2022
PoRT-cchsshared-dem-v1-alg
Public
Dementia Population Risk Tool (DemPoRT) model files
R
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Other
•0•1•1•0•Updated Feb 11, 2022Feb 11, 2022
pbl-planning-tool-guide
Public
Guidance for PBL Planning Tool developed via bookdown
TeX
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Other
•0•2•2•0•Updated Jan 20, 2021Jan 20, 2021
openottawar
Public
Retrieve Open Ottawa CVS data using R
R
•0•0•0•0•Updated Jun 24, 2020Jun 24, 2020
chime_sims-1
Public
Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.
Jupyter Notebook
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MIT License
•18•0•0•0•Updated Jun 8, 2020Jun 8, 2020
covid19-forecasts-orderly
Public
R
•10•0•0•0•Updated Apr 19, 2020Apr 19, 2020
covid19-short-term-forecasts
Public
HTML
•3•0•0•0•Updated Apr 10, 2020Apr 10, 2020
pbl-planning-tool-documentation
Public
Vignettes that demonstrate how the PBL Planning Tool can be used in health planning.
r rmarkdown projectbiglife
MIT License
•0•2•1•0•Updated Feb 20, 2020Feb 20, 2020
getting-started-with-git
Public
Learn how to install and use Git
4•1•2•1•Updated Jun 6, 2019Jun 6, 2019
pbl-embed
Public
HTML
•0•0•0•0•Updated Sep 17, 2018Sep 17, 2018