BGGN213

Introduction to Bioinformatics, Winter 2023

This repo is for my UCSD bioinformatics class, taken in Winter quarter of 2023 and taught by Barry Grant.

Index of material

Intro material: Working with R

• Lab 5 - Data exploration and visualization with R

• Lab 6 - R functions and R packages from CRAN and BioConductor

Using R and other tools for Bioinformatics

• Lab 6 - Introduction to machine learning for Bioinformatics

• Lab 7 - Unsupervised Learning: PCA, k-means, and hierarchical clustering

• Lab 8 - Structural Bioinformatics (AlphaFold2)

• Lab 9 - Halloween Candy data science project

• Lab 10 - Genome informatics

• Lab 11 - Transcriptomics and the analysis of RNA-Seq data

• Lab 12 - RNA-Seq analysis mini-project

• Lab 13 - Hands-on with Git and GitHub

• Lab 14 - Essential UNIX for bioinformatics

• Lab 15 - Analyzing sequencing data in the cloud

• Lab 16 - Analyzing sequencing data in the cloud

• Lab 17 - Pertussis Resurgence mini-project