BGGN213

Introduction to Bioinformatics, Winter 2023

This repo is for my UCSD bioinformatics class, taken in Winter quarter of 2023 and taught by Barry Grant.

Index of material

Intro material: Working with R

Lab 5 - Data exploration and visualization with R
Lab 6 - R functions and R packages from CRAN and BioConductor

Using R and other tools for Bioinformatics

Lab 6 - Introduction to machine learning for Bioinformatics
Lab 7 - Unsupervised Learning: PCA, k-means, and hierarchical clustering
Lab 8 - Structural Bioinformatics (AlphaFold2)
Lab 9 - Halloween Candy data science project
Lab 10 - Genome informatics
Lab 11 - Transcriptomics and the analysis of RNA-Seq data
Lab 12 - RNA-Seq analysis mini-project
Lab 13 - Hands-on with Git and GitHub
Lab 14 - Essential UNIX for bioinformatics
Lab 15 - Analyzing sequencing data in the cloud
Lab 16 - Analyzing sequencing data in the cloud
Lab 17 - Pertussis Resurgence mini-project