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33 Open 10 Closed
33 Open 10 Closed
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Issues list

Duplicate class label: "abnormality of anatomical entity physiology"
#55 opened Sep 19, 2023 by caufieldjh
@jamesamcl
1
DataFrame error in pipeline
#54 opened Jun 28, 2023 by jamesamcl
@jamesamcl
Add custom upheno lexical pipeline to phenio-utils
#53 opened Jun 28, 2023 by matentzn
@souzadevinicius
Phenio toolkit
#51 opened May 12, 2023 by souzadevinicius
@souzadevinicius
Create generic patterns on all remaining object properties
#49 opened Apr 18, 2023 by souzadevinicius
@souzadevinicius
Add a pipeline for matching DOSDP pattern files
#47 opened Mar 24, 2023 by matentzn
@souzadevinicius
1
HP vs MP special cases
#42 opened Oct 27, 2022 by caufieldjh
7
Add some kind of anti slim approach for upheno classes that should be skipped by semantic similarity
#41 opened Oct 25, 2022 by matentzn
uPheno 2 review
#40 opened Sep 18, 2022 by matentzn
4 tasks
@rays22
5
Create a Monarch Data Science library
#39 opened Aug 30, 2022 by matentzn
Provide instructions to create equivalence model of uPheno after the fact
#38 opened Aug 28, 2022 by matentzn
@matentzn
Create a version of HP/MP/ZP that contains _only_ unmatched definitions
#36 opened Feb 22, 2022 by matentzn
@matentzn
uPheno 2 should mirror _all_ phenotypes
#34 opened Feb 15, 2022 by matentzn
@matentzn
1
uPheno species independent layer needs to be enriched with SSPO synonyms
#35 opened Feb 15, 2022 by matentzn
@matentzn
PLANA_0007536 is both a property and a class/individual
#33 opened Feb 8, 2022 by marius-mather
1
Old monarch Jenkins pipeline in case needed
#32 opened Feb 2, 2022 by matentzn
Different sizes between HP-MP and HP-ZP mappings
#30 opened Feb 6, 2021 by liulizhi1996
1
Missing phenotypic orthologues
#28 opened Jan 11, 2021 by matentzn
Public uPheno2 (Alpha) review
#26 opened Mar 14, 2020 by matentzn
7
Find obo file to calculate semantic similarity between MPO and HPO terms
#25 opened Feb 26, 2020 by frequena
24
Ensure appropriate Metadata on final ontology artefacts
#21 opened Feb 12, 2020 by matentzn
@matentzn
Remove replace_owl_thing_in_tsvs from pipeline
#20 opened Jan 31, 2020 by matentzn
uPheno 2: Alpha review
#18 opened Jan 27, 2020 by matentzn
@matentzn
5
Maintain the cross-species mappings TSVs as part of release (alpha)
#17 opened Jan 27, 2020 by matentzn
@matentzn
Ensure that there is no "rogue" terms on the top level of the class hierarchy (under thing)
#16 opened Jan 27, 2020 by matentzn
@matentzn
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