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Added new 'density' term #294

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merged 9 commits into from
Dec 7, 2023
Merged

Added new 'density' term #294

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b953d39
Added new 'density' term
ar-ibrahim Oct 5, 2023
e61bf1e
Update dosdp patterns file
ar-ibrahim Oct 5, 2023
a3a345d
Update src/patterns/data/default/entity_attribute.tsv
ar-ibrahim Dec 7, 2023
f0131b0
Merge branch 'master' into add_NTR_density
ar-ibrahim Dec 7, 2023
69b1b4c
Merge branch 'add_NTR_density' of https://github.com/obophenotype/bio…
ar-ibrahim Dec 7, 2023
7115f3a
Update dosdp patterns file
ar-ibrahim Dec 7, 2023
689c0ec
Update entity attribute file. Restore previous terms.
rays22 Sep 27, 2023
64d8e69
Updated entity_attribute.tsv
ar-ibrahim Dec 7, 2023
6eea753
Update dosdp patterns file
ar-ibrahim Dec 7, 2023
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1 change: 1 addition & 0 deletions src/patterns/data/default/entity_attribute.tsv
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Expand Up @@ -4271,3 +4271,4 @@ OBA:2045222 basophilic erythroblast count CL:0000549 basophilic erythroblast PAT
OBA:2045223 myeloid leukocyte count CL:0000766 myeloid leukocyte PATO:0000070 amount myeloid white cell count https://orcid.org/0000-0001-8314-2140
OBA:2045224 visceral adipose tissue quantity UBERON:0035818 visceral fat PATO:0000070 amount https://orcid.org/0000-0001-8314-2140
OBA:2045225 blood clotting level UBERON:0010210 blood clot PATO:0000070 amount thrombus formation level https://orcid.org/0000-0001-8314-2140
OBA:2050351 breast mass density UBERON:0000310 breast PATO:0001019 mass density breast density PMID:37345113 https://orcid.org/0000-0001-6757-4744
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16 changes: 14 additions & 2 deletions src/patterns/definitions.owl
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Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/oba/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/oba/releases/2023-09-22/patterns/definitions.owl>
Annotation(owl:versionInfo "2023-09-22"^^xsd:string)
<http://purl.obolibrary.org/obo/oba/releases/2023-10-05/patterns/definitions.owl>
Annotation(owl:versionInfo "2023-10-05"^^xsd:string)

Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10033>))
Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10112>))
Expand Down Expand Up @@ -12277,6 +12277,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050346>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050347>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050348>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050349>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2050351>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060000>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060001>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBA_2060002>))
Expand Down Expand Up @@ -102357,6 +102358,16 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2050349> "level of interleukin-12 subunit beta in blood"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2050349> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000070> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PR_000001369> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>)))))

# Class: <http://purl.obolibrary.org/obo/OBA_2050351> (breast mass density)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2050351> "The mass density of a breast."^^xsd:string)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/OBA_2050351> "https://orcid.org/0000-0001-6757-4744"^^xsd:string)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/OBA_2050351> "PMID:37345113"^^xsd:string)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2050351> "breast density"^^xsd:string)
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/OBA_2050351> "mass density of breast"^^xsd:string)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBA_2050351> "breast mass density"^^xsd:string)
EquivalentClasses(<http://purl.obolibrary.org/obo/OBA_2050351> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0000310>)))

# Class: <http://purl.obolibrary.org/obo/OBA_2060000> (aggressive behavior towards inanimate objects rate)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "AUTO:patterns/patterns/entity_attribute"^^xsd:string) <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBA_2060000> "The rate of a aggressive behavior towards inanimate objects."^^xsd:string)
Expand Down Expand Up @@ -122332,6 +122343,7 @@ SubClassOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000970> Ob
SubClassOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000970> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001982>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000970> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001982>))))
SubClassOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000992> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000178>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000992> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0000178>))))
SubClassOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001005> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/GO_0030431>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001005> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0030431>))))
SubClassOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0000310>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0000310>))))
SubClassOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001037>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001037>))))
SubClassOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001130>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001130>))))
SubClassOf(ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0001435>))) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001019> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001435>))))
Expand Down