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Added new 'density' term #294

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merged 9 commits into from
Dec 7, 2023
Merged

Added new 'density' term #294

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b953d39
Added new 'density' term
ar-ibrahim Oct 5, 2023
e61bf1e
Update dosdp patterns file
ar-ibrahim Oct 5, 2023
a3a345d
Update src/patterns/data/default/entity_attribute.tsv
ar-ibrahim Dec 7, 2023
f0131b0
Merge branch 'master' into add_NTR_density
ar-ibrahim Dec 7, 2023
69b1b4c
Merge branch 'add_NTR_density' of https://github.com/obophenotype/bio…
ar-ibrahim Dec 7, 2023
7115f3a
Update dosdp patterns file
ar-ibrahim Dec 7, 2023
689c0ec
Update entity attribute file. Restore previous terms.
rays22 Sep 27, 2023
64d8e69
Updated entity_attribute.tsv
ar-ibrahim Dec 7, 2023
6eea753
Update dosdp patterns file
ar-ibrahim Dec 7, 2023
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116 changes: 2 additions & 114 deletions src/patterns/data/default/entity_attribute.tsv
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Expand Up @@ -1240,7 +1240,7 @@ OBA:0002278 GO:0030097 hemopoiesis PATO:0002181 displaced
OBA:0002279 UBERON:0008341 columella nasi PATO:0000122 length
OBA:0002280 UBERON:0001456 face PATO:0000052 shape
OBA:0002281 UBERON:0008200 forehead PATO:0000140 position
OBA:0002282 wateriness of faeces UBERON:0001988 feces PATO:0001548 quality of a liquid faeces liquidness|wateriness of feces https://orcid.org/0000-0001-8314-2140
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It seems that you are editing an earlier version of this file. Here you are undoing some edits that are unrelated to your addition of the density term.

OBA:0002282 UBERON:0001988 feces PATO:0001548 quality of a liquid
OBA:0002283 GO:0030421 defecation PATO:0000044 frequency
OBA:0002284 UBERON:0001165 pyloric antrum PATO:0000141 structure
OBA:0002285 UBERON:0001245 anus PATO:0000136 closure
Expand Down Expand Up @@ -4271,116 +4271,4 @@ OBA:2045222 basophilic erythroblast count CL:0000549 basophilic erythroblast PAT
OBA:2045223 myeloid leukocyte count CL:0000766 myeloid leukocyte PATO:0000070 amount myeloid white cell count https://orcid.org/0000-0001-8314-2140
OBA:2045224 visceral adipose tissue quantity UBERON:0035818 visceral fat PATO:0000070 amount https://orcid.org/0000-0001-8314-2140
OBA:2045225 blood clotting level UBERON:0010210 blood clot PATO:0000070 amount thrombus formation level https://orcid.org/0000-0001-8314-2140
OBA:2045226 carotid artery diameter UBERON:0005396 carotid artery segment PATO:0001334 diameter https://orcid.org/0000-0001-8314-2140
OBA:2045227 genu of corpus callosum volume UBERON:0015599 genu of corpus callosum PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045228 rostrum of corpus callosum volume UBERON:0015703 rostrum of corpus callosum PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045229 nerve conductivity attribute UBERON:0001021 nerve PATO:0001758 nerve conductivity https://orcid.org/0000-0001-8314-2140
OBA:2045230 growth rate attribute GO:0040007 growth PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045231 height growth attribute GO:0040007 growth PATO:0000119 height https://orcid.org/0000-0001-8314-2140
OBA:2045232 pulmonary artery root diameter UBERON:0002333 pulmonary trunk PATO:0001334 diameter https://orcid.org/0000-0001-8314-2140
OBA:2045233 pulmonary artery diameter UBERON:0002012 pulmonary artery PATO:0001334 diameter https://orcid.org/0000-0001-8314-2140
OBA:2045234 hearing threshold trait GO:0007605 sensory perception of sound PATO:0000152 threshold https://orcid.org/0000-0001-8314-2140
OBA:2045235 blood sedimentation trait CL:0000232 erythrocyte PATO:0001420 buoyancy https://orcid.org/0000-0001-8314-2140
OBA:2045236 granule cell layer dentate gyrus volume UBERON:0005381 dentate gyrus granule cell layer PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045237 dentate gyrus volume UBERON:0000200 gyrus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045238 caudal anterior cingulate cortex volume UBERON:0028715 caudal anterior cingulate cortex PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045239 caudal middle frontal gyrus volume UBERON:0006445 caudal middle frontal gyrus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045240 fusiform gyrus volume UBERON:0002766 fusiform gyrus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045241 lateral occipital cortex volume UBERON:0006114 lateral occipital cortex PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045242 lateral orbital frontal cortex volume UBERON:0022716 lateral orbital frontal cortex PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045243 temporal horn of lateral ventricle volume UBERON:0006091 inferior horn of the lateral ventricle PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045244 hippocampal formation volume UBERON:0002421 hippocampal formation PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045245 hippocampus fimbria volume UBERON:0002310 hippocampus fimbria PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045246 banks of the superior temporal sulcus volume UBERON:0028622 banks of superior temporal sulcus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045247 choroid plexus volume UBERON:0001886 choroid plexus PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045248 corpus callosum central volume UBERON:0015510 #N/A PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045249 corpus callosum volume UBERON:0002336 corpus callosum PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045250 isthmus cingulate cortex volume UBERON:0027061 #N/A PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045251 pars orbitalis volume UBERON:0006318 orbitalis muscle PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045252 transverse temporal cortex volume UBERON:0003939 transverse gyrus of Heschl PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045253 ventral diencephalon volume UBERON:0001894 diencephalon PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045254 carotid artery circumferential wall stress UBERON:0005396 carotid artery segment PATO:0001034 strain https://orcid.org/0000-0001-8314-2140
OBA:2045255 pulmonary artery strain UBERON:0002012 pulmonary artery PATO:0001034 strain https://orcid.org/0000-0001-8314-2140
OBA:2045256 multiple keratinocyte carcinoma susceptibility CL:0000312 keratinocyte PATO:0001043 susceptibility toward https://orcid.org/0000-0001-8314-2140
OBA:2045259 urine relative density UBERON:0001088 urine PATO:0000033 concentration of https://orcid.org/0000-0001-8314-2140
OBA:2045260 red blood cell density CL:0000232 erythrocyte PATO:0001164 dense https://orcid.org/0000-0001-8314-2140
OBA:2045261 quality of life UBERON:0000104 life cycle PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045262 hearing process quality GO:0007605 sensory perception of sound PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045263 visual perception quality GO:0007601 visual perception PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045264 optic disc area UBERON:0001783 optic disc PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045265 optic cup area UBERON:0003072 optic cup PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045266 carotid artery wall area attribute UBERON:0037094 wall of common carotid artery PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045267 cerebral cortex area attribute UBERON:0000956 cerebral cortex PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045268 striated muscle fiber area attribute CL:0000737 striated muscle cell PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045269 aortic vascular smooth muscle cell calcification attribute CL:0002539 aortic smooth muscle cell PATO:0001447 calcified https://orcid.org/0000-0001-8314-2140
OBA:2045270 basal ganglion growth attribute UBERON:0002420 basal ganglion PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045271 brain growth attribute UBERON:0000955 brain PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045272 cerebellum growth attribute UBERON:0002037 cerebellum PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045273 cerebral cortex growth attribute UBERON:0000956 cerebral cortex PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045274 prefrontal cortex growth attribute UBERON:0000451 prefrontal cortex PATO:0001492 growth rate https://orcid.org/0000-0001-8314-2140
OBA:2045275 heart function attribute UBERON:0000948 heart PATO:0001509 functionality https://orcid.org/0000-0001-8314-2140
OBA:2045276 erythrocyte attribute CL:0000232 erythrocyte PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045277 dorsolateral prefrontal cortex functionality attribute UBERON:0009834 dorsolateral prefrontal cortex PATO:0001510 functional https://orcid.org/0000-0001-8314-2140
OBA:2045278 carotid artery stiffness UBERON:0005396 carotid artery segment PATO:0001543 flexibility https://orcid.org/0000-0001-8314-2140
OBA:2045279 number of teeth UBERON:0003672 dentition PATO:0001555 has number of https://orcid.org/0000-0001-8314-2140
OBA:2045280 anterior chamber depth UBERON:0001766 anterior chamber of eyeball PATO:0001595 depth https://orcid.org/0000-0001-8314-2140
OBA:2045281 aortic vascular smooth muscle cell proliferation attribute CL:0002539 aortic smooth muscle cell PATO:0002102 proliferative https://orcid.org/0000-0001-8314-2140
OBA:2045282 facial pigmentation UBERON:0001456 face PATO:0002247 degree of pigmentation https://orcid.org/0000-0001-8314-2140
OBA:2045283 anterior chamber of eyeball pressure UBERON:0001766 anterior chamber of eyeball PATO:0001025 pressure https://orcid.org/0000-0001-8314-2140
OBA:2045284 microglial activation attribute CL:0000129 microglial cell PATO:0002354 active https://orcid.org/0000-0001-8314-2140
OBA:2045285 erosive tooth wear attribute UBERON:0001091 calcareous tooth PATO:0002453 eroding https://orcid.org/0000-0001-8314-2140
OBA:2045286 cortisol secretion efficacy GO:0043400 cortisol secretion PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045287 platelet reactivity efficacy GO:0030168 platelet activation PATO:0015002 process efficacy https://orcid.org/0000-0001-8314-2140
OBA:2045288 visual memory process attribute NBO:0000196 visual memory PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045289 fatty acid desaturase enzyme activity attribute GO:0019395 fatty acid oxidation PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045290 angiotensin converting enzyme activity attribute PR:000001322 angiotensin-converting enzyme PATO:0001414 catalytic activity https://orcid.org/0000-0001-8314-2140
OBA:2045291 cerebrospinal fluid composition attribute UBERON:0001359 cerebrospinal fluid PATO:0000025 composition https://orcid.org/0000-0001-8314-2140
OBA:2045292 sensory perception of taste attribute GO:0050909 sensory perception of taste PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045293 sexual activity behaviour attribute NBO:0000034 sexual activity PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045294 asparaginase activity GO:0006530 asparagine catabolic process PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045295 brain connectivity attribute UBERON:0000955 brain PATO:0000141 structure https://orcid.org/0000-0001-8314-2140
OBA:2045296 defense response to other organism process attribute GO:0098542 defense response to other organism PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045328 DNA methylation level GO:0006306 DNA methylation PATO:0002062 physical quality of a process https://orcid.org/0000-0001-8314-2140
OBA:2045372 gestational blood glucose level UBERON:0009097 gravid organism OBA:VT0000188 blood glucose amount https://orcid.org/0000-0001-8314-2140
OBA:2045389 leukocyte ratio CL:0000738 leukocyte PATO:0001470 proportionality to https://orcid.org/0000-0001-8314-2140
OBA:2045390 basophil ratio CL:0000767 basophil PATO:0001470 proportionality to https://orcid.org/0000-0001-8314-2140
OBA:2045391 eosinophil ratio CL:0000771 eosinophil PATO:0001470 proportionality to https://orcid.org/0000-0001-8314-2140
OBA:2045392 basophil to leukocyte ratio CL:0000767 basophil OBA:2045389 leukocyte ratio https://orcid.org/0000-0001-8314-2140
OBA:2045393 eosinophil to leukocyte ratio CL:0000771 eosinophil OBA:2045389 leukocyte ratio https://orcid.org/0000-0001-8314-2140
OBA:2045406 CL:0002535 epithelial cell of cervix PATO:0000051 morphology https://orcid.org/0000-0001-8314-2140
OBA:2045407 response to bacterium process attribute GO:0009617 response to bacterium PATO:0001236 process quality https://orcid.org/0000-0001-8314-2140
OBA:2045408 amniotic fluid pH UBERON:0000173 amniotic fluid PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045409 blood pH UBERON:0000178 blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045410 UBERON:0000468 multicellular organism PATO:0000011 age https://orcid.org/0000-0001-8314-2140
OBA:2045411 UBERON:0000479 tissue PATO:0000125 mass https://orcid.org/0000-0001-8314-2140
OBA:2045412 UBERON:0001062 anatomical entity PATO:0000051 morphology https://orcid.org/0000-0001-8314-2140
OBA:2045413 UBERON:0001062 anatomical entity PATO:0000125 mass https://orcid.org/0000-0001-8314-2140
OBA:2045414 UBERON:0001088 urine PATO:0000957 opacity https://orcid.org/0000-0001-8314-2140
OBA:2045415 UBERON:0001088 urine PATO:0002027 osmolality https://orcid.org/0000-0001-8314-2140
OBA:2045416 synovial fluid attribute UBERON:0001090 synovial fluid PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045417 UBERON:0001090 synovial fluid PATO:0000992 viscosity https://orcid.org/0000-0001-8314-2140
OBA:2045418 appearance of cerebrospinal fluid UBERON:0001359 cerebrospinal fluid PATO:0001300 optical quality https://orcid.org/0000-0001-8314-2140
OBA:2045419 UBERON:0001359 cerebrospinal fluid PATO:0000014 color https://orcid.org/0000-0001-8314-2140
OBA:2045420 UBERON:0001417 skin of neck PATO:0000915 thickness https://orcid.org/0000-0001-8314-2140
OBA:2045421 semen attribute UBERON:0001968 semen PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045422 UBERON:0001968 semen PATO:0000918 volume https://orcid.org/0000-0001-8314-2140
OBA:2045423 UBERON:0001968 semen PATO:0000992 viscosity https://orcid.org/0000-0001-8314-2140
OBA:2045424 semen pH UBERON:0001968 semen PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045425 plasma pH UBERON:0001969 blood plasma PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045426 UBERON:0001969 blood plasma PATO:0002027 osmolality https://orcid.org/0000-0001-8314-2140
OBA:2045427 UBERON:0001977 blood serum PATO:0000992 viscosity https://orcid.org/0000-0001-8314-2140
OBA:2045428 UBERON:0001988 feces PATO:0000037 consistency firmness of faeces https://orcid.org/0000-0001-8314-2140
OBA:2045429 UBERON:0001988 feces PATO:0000125 mass faeces mass https://orcid.org/0000-0001-8314-2140
OBA:2045430 feces pH UBERON:0001988 feces PATO:0001842 acidity pH of faeces https://orcid.org/0000-0001-8314-2140
OBA:2045431 body fluid attribute UBERON:0006314 bodily fluid PATO:0000001 quality https://orcid.org/0000-0001-8314-2140
OBA:2045432 body fluid color UBERON:0006314 bodily fluid PATO:0000014 color https://orcid.org/0000-0001-8314-2140
OBA:2045433 body fluid pH UBERON:0006314 bodily fluid PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045434 umbilical cord blood pH UBERON:0012168 umbilical cord blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045435 stomach content pH UBERON:0013525 stomach lumen PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045436 arterial blood pH UBERON:0013755 arterial blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045437 venous blood pH UBERON:0013756 venous blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045438 capillary blood pH UBERON:0013757 capillary blood PATO:0001842 acidity https://orcid.org/0000-0001-8314-2140
OBA:2045439 body surface area UBERON:0035159 entire surface of organism PATO:0001323 area https://orcid.org/0000-0001-8314-2140
OBA:2045451 attribute of response to allergen in serum UBERON:0001977 blood serum OBA:2045453 attribute of response to allergen https://orcid.org/0000-0001-8314-2140
OBA:2045452 attribute of response to thyroid hormone in plasma UBERON:0001969 blood plasma OBA:2045454 attribute of response to thyroid hormone https://orcid.org/0000-0001-8314-2140
OBA:2030004 total skin mass UBERON:0002097 skin of body PATO:0000125 mass mass of the entire skin https://orcid.org/0000-0003-2699-3066
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OBA:2050351 breast density UBERON:0000310 breast PATO:0001019 mass density breast tissue density PMID:37345113 https://orcid.org/0000-0001-6757-4744
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