ENH: Hierarchical clustering of the correlation matrix #58
Workflow file for this run
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python package | |
| on: | |
| push: | |
| branches: [ '*' ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ main, 'maint/*' ] | |
| jobs: | |
| build: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.7, 3.8, 3.9] | |
| steps: | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/checkout@v2 | |
| with: | |
| ssh-key: "${{ secrets.NIPREPS_DEPLOY }}" | |
| fetch-depth: 0 | |
| - name: Build in confined, updated environment and interpolate version | |
| run: | | |
| python -m venv /tmp/buildenv | |
| source /tmp/buildenv/bin/activate | |
| python -m pip install -U "setuptools~=58.0" "setuptools_scm>=6.2" pip wheel twine docutils | |
| # Interpolate version | |
| if [[ "$GITHUB_REF" == refs/tags/* ]]; then | |
| TAG=${GITHUB_REF##*/} | |
| fi | |
| THISVERSION=$( python setup.py --version ) | |
| THISVERSION=${TAG:-$THISVERSION} | |
| echo "Expected VERSION: \"${THISVERSION}\"" | |
| echo "THISVERSION=${THISVERSION}" >> ${GITHUB_ENV} | |
| python setup.py sdist | |
| python -m twine check dist/mriqc-learn-${THISVERSION}.tar.gz | |
| python setup.py bdist_wheel | |
| python -m twine check dist/mriqc_learn-${THISVERSION}-py3-none-any.whl | |
| - name: Install in confined environment [sdist] | |
| run: | | |
| python -m venv /tmp/install_sdist | |
| source /tmp/install_sdist/bin/activate | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install dist/mriqc-learn-${THISVERSION}.tar.gz | |
| INSTALLED_VERSION=$(python -c 'import mriqc_learn; print(mriqc_learn.__version__, end="")') | |
| echo "VERSION: \"${THISVERSION}\"" | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| - name: Install in confined environment [wheel] | |
| run: | | |
| python -m venv /tmp/install_wheel | |
| source /tmp/install_wheel/bin/activate | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install dist/mriqc_learn-${THISVERSION}-py3-none-any.whl | |
| INSTALLED_VERSION=$(python -c 'import mriqc_learn; print(mriqc_learn.__version__, end="")') | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| - name: Install in confined environment [pip install .] | |
| run: | | |
| python -m venv /tmp/setup_install | |
| source /tmp/setup_install/bin/activate | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install . | |
| INSTALLED_VERSION=$(python -c 'import mriqc_learn; print(mriqc_learn.__version__, end="")') | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| - name: Install in confined environment [pip install -e .] | |
| run: | | |
| python -m venv /tmp/setup_develop | |
| source /tmp/setup_develop/bin/activate | |
| python -m pip install pip | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install -e . | |
| INSTALLED_VERSION=$(python -c 'import mriqc_learn; print(mriqc_learn.__version__, end="")') | |
| echo "INSTALLED: \"${INSTALLED_VERSION}\"" | |
| test "${INSTALLED_VERSION}" = "${THISVERSION}" | |
| flake8: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.7 | |
| - run: pip install flake8 | |
| - run: flake8 mriqc_learn/ |