Merge pull request #78 from nf-core/fix-missing-panel-param-check

Fix panel parameter validation during pre-flight check
nf-core · Aug 7, 2024 · 3742776 · 3742776
2 parents 49872fc + 21a0bc9
commit 3742776
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy
@@ -178,13 +178,13 @@ class WorkflowMain {
 
         if (run_mode === Constants.RunMode.TARGETED) {
 
-            if (!params.containsKey('panel')) {
+            if (!params.containsKey('panel') || params.panel === null) {
 
                 def panels = Constants.PANELS_DEFINED.join('\n    - ')
                 log.error "\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n" +
-                    "  A panel is required to be set using the --panel CLI argument or in a \n" +
-                    "  configuration file.\n" +
-                    "  Currently, the available panels are:\n" +
+                    "  A panel is required to be set using the --panel CLI argument or in a\n" +
+                    "  configuration file when running in targeted mode.\n" +
+                    "  Currently, the available built-in panels are:\n" +
                     "    - ${panels}\n" +
                     "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~"
                 Nextflow.exit(1)