Merge pull request #76 from nf-core/lilac-samplesheet-bam-input

Allow RNA BAM from samplesheet as LILAC input
nf-core · Aug 6, 2024 · 49872fc · 49872fc
2 parents 41010dd + 7ec0f39
commit 49872fc
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/subworkflows/local/lilac_calling/main.nf b/subworkflows/local/lilac_calling/main.nf
@@ -193,8 +193,8 @@ workflow LILAC_CALLING {
                 nbai_dna,
                 tbam_dna,
                 tbai_dna,
-                tbam_rna,
-                tbai_rna,
+                Utils.selectCurrentOrExisting(tbam_rna, meta, Constants.INPUT.BAM_RNA_TUMOR),
+                Utils.selectCurrentOrExisting(tbai_rna, meta, Constants.INPUT.BAI_RNA_TUMOR),
                 Utils.selectCurrentOrExisting(purple_dir, meta, Constants.INPUT.PURPLE_DIR),
             ]
         }