Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Description of proposed changes
Adds Snakemake rules and scripts to make Markdown tables as part of the nextflu-private workflow, so we can add these tables to our monthly reports.
Related issue(s)
The functionality from this PR depends on the tabulate package. This package gets installed implicitly in Nextstrain Docker and Conda runtimes as a dependency of Snakemake, however we will want to eventually install tabulate in those runtimes explicitly to document that we depend on it directly. See this Slack thread for more details.
Checklist