Prefer custom rule for GISAID data over the general parse rule

nextstrain · Dec 1, 2023 · 67aa5c9 · 67aa5c9
1 parent 05c22e8
commit 67aa5c9
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/profiles/gisaid/prepare_data.smk b/profiles/gisaid/prepare_data.smk
@@ -1,3 +1,5 @@
+ruleorder: prepare_sequences > parse
+
 # Assumes that metadata XLS is the XLS metadata file downloaded from GISAID for
 # the same samples that appear in the raw sequences FASTA below.
 #