chore: rebuild [skip ci]

nextstrain · Nov 16, 2023 · 0b8fba9 · 0b8fba9
1 parent ba5dd2b
commit 0b8fba9
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Showing 23 changed files with 2,786 additions and 898 deletions.
diff --git a/data_output/index.json b/data_output/index.json
@@ -917,36 +917,17 @@
           }
         },
         {
-          "path": "nextstrain/mpx/hmpxv-b1/pseudo_ON563414",
+          "path": "nextstrain/mpox/all-clades/rivers-with-ancestral-snps",
           "enabled": true,
           "attributes": {
-            "name": "Human Monkeypox Lineage B.1*",
-            "reference name": "MPXV_USA_2022_MA001 in NC_063383 coordinates",
-            "reference accession": "pseudo_ON563414"
-          },
-          "maintenance": {
-            "website": [
-              "https://nextstrain.org",
-              "https://clades.nextstrain.org"
-            ],
-            "documentation": [
-              "https://github.com/nextstrain/nextclade_data",
-              "https://docs.nextstrain.org/projects/nextclade"
-            ],
-            "source code": [
-              "https://github.com/nextstrain/nextclade_data",
-              "https://github.com/neherlab/nextclade_data_workflows"
-            ],
-            "issues": [
-              "https://github.com/nextstrain/nextclade_data",
-              "https://github.com/nextstrain/nextclade_data/issues"
-            ],
-            "organizations": [
-              "Nextstrain"
-            ],
-            "authors": [
-              "Nextstrain team <https://nextstrain.org>"
-            ]
+            "name": {
+              "value": "MPXV",
+              "valueFriendly": "Monkeypox (All Clades)"
+            },
+            "reference": {
+              "value": "ancestral",
+              "valueFriendly": "Reconstructed ancestral MPXV"
+            }
           },
           "files": {
             "changelog": "CHANGELOG.md",
@@ -963,11 +944,7 @@
               "missingData",
               "mixedSites",
               "privateMutations",
-              "snpClusters",
               "stopCodons"
-            ],
-            "other": [
-              "mutLabels"
             ]
           },
           "versions": [
@@ -988,36 +965,17 @@
           }
         },
         {
-          "path": "nextstrain/mpx/hmpxv/NC_063383.1",
+          "path": "nextstrain/mpox/clade-iib/rivers",
           "enabled": true,
           "attributes": {
-            "name": "Human Monkeypox (hMPXV)",
-            "reference name": "MPXV-M5312_HM12_Rivers",
-            "reference accession": "NC_063383.1"
-          },
-          "maintenance": {
-            "website": [
-              "https://nextstrain.org",
-              "https://clades.nextstrain.org"
-            ],
-            "documentation": [
-              "https://github.com/nextstrain/nextclade_data",
-              "https://docs.nextstrain.org/projects/nextclade"
-            ],
-            "source code": [
-              "https://github.com/nextstrain/nextclade_data",
-              "https://github.com/neherlab/nextclade_data_workflows"
-            ],
-            "issues": [
-              "https://github.com/nextstrain/nextclade_data",
-              "https://github.com/nextstrain/nextclade_data/issues"
-            ],
-            "organizations": [
-              "Nextstrain"
-            ],
-            "authors": [
-              "Nextstrain team <https://nextstrain.org>"
-            ]
+            "name": {
+              "value": "hMPXV",
+              "valueFriendly": "Human Monkeypox (hMPXV)"
+            },
+            "reference": {
+              "value": "NC_063383.1",
+              "valueFriendly": "MPXV-M5312_HM12_Rivers"
+            }
           },
           "files": {
             "changelog": "CHANGELOG.md",
@@ -1056,36 +1014,17 @@
           }
         },
         {
-          "path": "nextstrain/mpx/mpxv/ancestral",
+          "path": "nextstrain/mpox/lineage-b.1/rivers-with-usa-2022-ma001-snps",
           "enabled": true,
           "attributes": {
-            "name": "Monkeypox (All Clades)",
-            "reference name": "Reconstructed ancestral MPXV",
-            "reference accession": "ancestral"
-          },
-          "maintenance": {
-            "website": [
-              "https://nextstrain.org",
-              "https://clades.nextstrain.org"
-            ],
-            "documentation": [
-              "https://github.com/nextstrain/nextclade_data",
-              "https://docs.nextstrain.org/projects/nextclade"
-            ],
-            "source code": [
-              "https://github.com/nextstrain/nextclade_data",
-              "https://github.com/neherlab/nextclade_data_workflows"
-            ],
-            "issues": [
-              "https://github.com/nextstrain/nextclade_data",
-              "https://github.com/nextstrain/nextclade_data/issues"
-            ],
-            "organizations": [
-              "Nextstrain"
-            ],
-            "authors": [
-              "Nextstrain team <https://nextstrain.org>"
-            ]
+            "name": {
+              "value": "hMPXV_B1",
+              "valueFriendly": "Human Monkeypox Lineage B.1*"
+            },
+            "reference": {
+              "value": "pseudo_ON563414",
+              "valueFriendly": "MPXV_USA_2022_MA001 in NC_063383 coordinates"
+            }
           },
           "files": {
             "changelog": "CHANGELOG.md",
@@ -1102,7 +1041,11 @@
               "missingData",
               "mixedSites",
               "privateMutations",
+              "snpClusters",
               "stopCodons"
+            ],
+            "other": [
+              "mutLabels"
             ]
           },
           "versions": [