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@nextstrain-bot nextstrain-bot released this 28 Mar 07:02
2.13.1
157f092

Nextclade CLI 2.13.1 (2023-03-28)

Lower verbosity level of translation-related warnings in Nextclade CLI

Warnings related to translation of peptides now have verbosity level "info", down from "warning", to reduce clutter in logs. You can still find all errors and warnings in the "errors" and "warnings" columns of the CSV and TSV output files, as well as in the corresponding fields of JSON output files. If you want these warnings to be printed into the console, you can increase Nextclade CLI verbosity level to "info" by adding at least one occurrence of --verbose (-v) flag or by explicitly setting --verbosity=info or to a lower value. Type nextclade run --help for more details.

Internal changes

  • Add more smoke tests, including for datasets with default reference

Commit history

(click to expand)

Instructions

📥 Nextclade CLI & Nextalign CLI can be downloaded from the links in the "Assets" section just below. Click "Show all" at the bottom of the "Assets" section to show more download options. Note the difference between "nextalign" and "nextclade" files as well as differences in operating systems and computer architectures.

🌐 Nextclade Web is available at https://clades.nextstrain.org

🐋 Docker images are available at DockerHub

📚 To understand how it all works, make sure to read the Documentation

Assets 16
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