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@nextstrain-bot nextstrain-bot released this 24 Jan 19:10

Nextclade CLI 2.10.1 (2023-01-24)

Ensure --output-all, --output-tsv, --output-csv can be used together again in Nextclade CLI

This fixes a regression introduced in Nextclade CLI 2.10.0, where --output-all, --output-tsv, --output-csv arguments became mutually exclusive. This was not intended and now resolved.

This bug was breaking our bioconda checks, so Nextclade CLI version 2.10.0 will not be available in bioconda. Use 2.10.1 instead.

Nextclade Web is not affected.

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Instructions

📥 Nextclade CLI & Nextalign CLI can be downloaded from the links in the "Assets" section just below. There click "Show all" to show more options. Note the difference between "nextalign" and "nextclade" files.

🌐 Nextclade Web is available at https://clades.nextstrain.org

🐋 Docker images are available at DockerHub

📚 To understand how it all works, make sure to read the Documentation