feat: rename old concepts #1269
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Renames the following concepts in the visible parts of the software: strings in the UI, text messages, CLI args etc. - genemap -> genome annotation - virus properties -> pathogen.json - root sequence -> reference sequence Note that project code (e.g. types and variable names) still largely contains old names. This would be a large refactor and might introduce bugs, so I see no immediate advantage there.
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Renames the following concepts in the visible parts of the software: strings in the UI, text messages, CLI args etc.
Note that project code (e.g. types and variable names) still largely contains old names. This would be a large refactor and might introduce bugs, so I see no immediate advantage there.