Add automatic detection of datasets #1244

ivan-aksamentov · 2023-09-01T20:18:40Z

Sibling PR in the data repo: nextstrain/nextclade_data#83

vercel · 2023-09-01T20:18:44Z

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Name	Status	Preview	Updated (UTC)
nextclade	✅ Ready (Inspect)	Visit Preview	Sep 18, 2023 8:02am

ivan-aksamentov added 6 commits September 1, 2023 18:59

feat(cli): scaffold seq sort cli command, input parsing and main loop

a224aaf

feat(cli): implement ref search

16cf181

feat(cli): allow external minimizer index JSON file

0cf48f9

feat(cli): improve error message text

dfa63a6

fix(cli): version warning false positive

d327c77

feat(cli): add cli params for minimizer search algo

8940bbb

ivan-aksamentov mentioned this pull request Sep 1, 2023

Add automatic detection of datasets nextstrain/nextclade_data#83

Merged

vercel bot deployed to Preview September 4, 2023 15:11 View deployment

ivan-aksamentov force-pushed the master branch from 3750a16 to e7a7e9c Compare September 4, 2023 15:19

ivan-aksamentov force-pushed the feat/ref-minimizer branch from ff315cd to 515905f Compare September 4, 2023 15:19

ivan-aksamentov force-pushed the master branch from e7a7e9c to 93f31a9 Compare September 4, 2023 15:22

ivan-aksamentov force-pushed the feat/ref-minimizer branch from 515905f to 93e7206 Compare September 4, 2023 15:23

vercel bot deployed to Preview September 4, 2023 15:41 View deployment

ivan-aksamentov force-pushed the master branch from 93f31a9 to edefa32 Compare September 4, 2023 16:40

Merge remote-tracking branch 'origin/master' into feat/ref-minimizer

b6b4fe8

ivan-aksamentov force-pushed the feat/ref-minimizer branch from 93e7206 to b6b4fe8 Compare September 4, 2023 16:41

vercel bot deployed to Preview September 4, 2023 16:54 View deployment

ivan-aksamentov added 2 commits September 4, 2023 20:02

fix(cli): allow minimizer index to be absent

5b6bc87

feat(cli): write sorted fasta files

1b90f1b

vercel bot deployed to Preview September 4, 2023 18:10 View deployment

fix(web): dataset equality

db37dd3

ivan-aksamentov force-pushed the feat/ref-minimizer branch from 6eb988b to db37dd3 Compare September 4, 2023 18:11

vercel bot deployed to Preview September 4, 2023 18:26 View deployment

vercel bot had a problem deploying to Preview September 5, 2023 00:39 Failure

feat(web): add sequence sorting prototype

8ac3f67

ivan-aksamentov force-pushed the feat/ref-minimizer branch from e8cc7a3 to 8ac3f67 Compare September 5, 2023 00:43

vercel bot had a problem deploying to Preview September 5, 2023 00:58 Failure

fix: move wasm module into webworker

bb5aa6a

vercel bot deployed to Preview September 5, 2023 01:33 View deployment

ivan-aksamentov force-pushed the feat/ref-minimizer branch from 51a90cd to 61eef71 Compare September 12, 2023 06:02

ivan-aksamentov added 2 commits September 12, 2023 08:06

Merge remote-tracking branch 'origin/master' into feat/ref-minimizer

118f36b

feat: filter datasets in wasm to speedup web ui

eb15094

vercel bot deployed to Preview September 12, 2023 06:44 View deployment

ivan-aksamentov added 9 commits September 12, 2023 22:07

feat: remove list animations to speed things up

c4d2763

fix: styled-components warning about updates being too frequent

5dfb741

feat: make batch flushes more frequent for faster visible response

07526b8

fix: typing

79a44fc

fix: sorting of dataset list

f17cf32

feat(cli): add dataset statistics into sort command printout

407921c

feat(cli): print results of sort command only in verbose mode

a81bc88

feat(cli): add output tsv file for sort command

d4efb62

fix(cli): add undetected entries into sort tsv

99fb0c8

vercel bot deployed to Preview September 12, 2023 23:46 View deployment

feat(web): reimplement main page

131fedd

vercel bot deployed to Preview September 14, 2023 06:18 View deployment

ivan-aksamentov added 3 commits September 15, 2023 10:24

feat(web): prettify nav bar

cabb824

fix(web): small styling

55093f9

fix(web): use unique files ids as react keys

68438ff

vercel bot deployed to Preview September 15, 2023 10:22 View deployment

ivan-aksamentov added 3 commits September 18, 2023 08:13

feat(web): scroll current dataset list item into view

01f3449

refactor: simplify list scrolling setup

453cf3b

feat(web): preselect top dataset after suggestion is complete

f0e0cdf

vercel bot deployed to Preview September 18, 2023 07:10 View deployment

ivan-aksamentov marked this pull request as ready for review September 18, 2023 07:42

ivan-aksamentov added 2 commits September 18, 2023 09:46

refactor: lint

a002c12

fix(web): text of example entry in query sequence list

996980d

vercel bot deployed to Preview September 18, 2023 08:02 View deployment

ivan-aksamentov merged commit 57c3f47 into master Sep 18, 2023
16 checks passed

ivan-aksamentov deleted the feat/ref-minimizer branch September 18, 2023 08:04

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Add automatic detection of datasets #1244

Add automatic detection of datasets #1244

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Add automatic detection of datasets #1244

Add automatic detection of datasets #1244

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