feat: Support a NEXTCLADE_EXTRA_CA_CERTS environment variable

Allows adding additional CA certificates to the trust store specifically
for Nextclade, for when modifying the system's trust store isn't
desirable/possible.  Works across all platforms.

Currently requires using landed unreleased changes to
rustls-platform-verifier so that macOS and Windows have the needed
Verifier::new_with_extra_certs() API.¹  That API also has signature
changes proposed² which, while unmerged, seem likely to land, so use
those in anticipation.  They actually bring the signature back closer to
the latest release (0.3.4).

¹ <rustls/rustls-platform-verifier#58>
² <rustls/rustls-platform-verifier#145>

Related-to: <#1529>
Related-to: <#726>

Cargo.toml

@@ -73,7 +73,11 @@ regex = "=1.8.4"
 reqwest = { version = "=0.12.8", default-features = false, features = ["blocking", "deflate", "gzip", "brotli", "socks", "rustls-tls"] }
 rstest = "=0.17.0"
 rstest_reuse = "=0.5.0"
-rustls-platform-verifier = "=0.3.4"
+rustls = { version = "=0.23.14", default-features = false, features = ["ring", "logging", "std", "tls12"] }
+rustls-platform-verifier = { git = "https://github.com/rustls/rustls-platform-verifier.git", rev = "ca87571fe47730665917b8c29f14a3989f3cbe57" }
+rustls-pemfile = "=2.2.0"
+rustls-pki-types = "=1.9.0"
+rustls-webpki = { version = "=0.102.8", features = ["ring"] }
 schemars = { version = "=0.8.12", features = ["chrono", "either", "enumset", "indexmap"] }
 semver = { version = "=1.0.17", features = ["serde"] }
 serde = { version = "=1.0.164", features = ["derive"] }

packages/nextclade-cli/Cargo.toml

@@ -41,7 +41,11 @@ pretty_assertions = { workspace = true }
 rayon = { workspace = true }
 regex = { workspace = true }
 reqwest = { workspace = true }
+rustls = { workspace = true }
 rustls-platform-verifier = { workspace = true }
+rustls-pemfile = { workspace = true }
+rustls-pki-types = { workspace = true }
+rustls-webpki = { workspace = true }
 schemars = { workspace = true }
 semver = { workspace = true }
 serde = { workspace = true }

packages/nextclade-cli/src/io/http_client.rs

@@ -1,12 +1,19 @@
 use clap::{Parser, ValueHint};
-use eyre::Report;
+use eyre::{Report, WrapErr};
 use log::info;
 use nextclade::make_internal_error;
 use nextclade::utils::info::{this_package_name, this_package_version_str};
 use reqwest::blocking::Client;
 use reqwest::{Method, Proxy};
-use rustls_platform_verifier;
+use rustls::ClientConfig;
+use rustls_pemfile;
+use rustls_pki_types::CertificateDer;
+use rustls_platform_verifier::Verifier;
+use std::env;
+use std::io::BufReader;
+use std::fs::File;
 use std::str::FromStr;
+use std::sync::Arc;
 use std::time::Duration;
 use url::Url;
 
@@ -62,8 +69,13 @@ impl HttpClient {
 
     let user_agent = format!("{} {}", this_package_name(), this_package_version_str());
 
+    let tls_config = ClientConfig::builder()
+      .dangerous() // …but the rustls_platform_verifier::Verifier is safe
+      .with_custom_certificate_verifier(Arc::new(Verifier::new_with_extra_roots(extra_ca_certs()?)?))
+      .with_no_client_auth();
+
     let client = client_builder
-      .use_preconfigured_tls(rustls_platform_verifier::tls_config())
+      .use_preconfigured_tls(tls_config)
       .connection_verbose(verbose)
       .connect_timeout(Some(Duration::from_secs(60)))
       .user_agent(user_agent)
@@ -112,3 +124,21 @@ impl HttpClient {
     Ok(content)
   }
 }
+
+fn extra_ca_certs() -> Result<impl IntoIterator<Item = CertificateDer<'static>>, Report> {
+  match env::var_os("NEXTCLADE_EXTRA_CA_CERTS") {
+    Some(filename) => {
+      let file = File::open(filename.clone())
+        .wrap_err_with(|| format!("When opening NEXTCLADE_EXTRA_CA_CERTS file {filename:?}"))?;
+
+      let mut reader = BufReader::new(file);
+
+      let certs = rustls_pemfile::certs(&mut reader)
+        .map(|c| c.wrap_err_with(|| "When parsing an extra CA certificate".to_owned()))
+        .collect::<Result<Vec<_>, Report>>()?;
+
+      Ok(certs)
+    }
+    None => Ok(vec![])
+  }
+}