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Phylo update clades #270

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merged 2 commits into from
Aug 15, 2024
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Phylo update clades #270

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phylogenetic: Update clade I in clades.tsv
joverlee521 Aug 15, 2024
59b3edf
phylogenetic: Update clades.tsv
joverlee521 Aug 15, 2024
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13 changes: 9 additions & 4 deletions phylogenetic/defaults/clades.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -2,11 +2,14 @@
clade gene site alt
outgroup nuc 179226 T

clade I nuc 87560 T
clade I nuc 136015 A
clade I nuc 86502 T
clade I nuc 133368 A

clade Ib nuc 6014 G
clade Ib nuc 108966 T
clade Ia clade clade I
clade Ia nuc 35352 A

clade Ib clade clade I
clade Ib nuc 19455 T

clade II nuc 86502 G
clade II nuc 150970 A
Expand All @@ -28,10 +31,12 @@ A.2 nuc 34472 T
A.2.1 clade A.2
A.2.1 nuc 25072 T
A.2.1 nuc 140492 C
A.2.1 nuc 179537 T

A.2.2 clade A.2
A.2.2 nuc 21991 A
A.2.2 nuc 103019 T
A.2.2 nuc 158424 A

A.2.3 clade A.2
A.2.3 nuc 57284 T
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