[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
nextstrain · Oct 18, 2023 · 712f584 · 712f584
1 parent abd2108
commit 712f584
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Showing 3 changed files with 10 additions and 6 deletions.
diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
@@ -23,8 +23,8 @@ jobs:
           phylogenetic \
           --configfile profiles/ci/builds.yaml
       artifact-paths: |
-          phylogenetic/auspice/
-          phylogenetic/results/
-          phylogenetic/benchmarks/
-          phylogenetic/logs/
-          phylogenetic/.snakemake/log/
+        phylogenetic/auspice/
+        phylogenetic/results/
+        phylogenetic/benchmarks/
+        phylogenetic/logs/
+        phylogenetic/.snakemake/log/
diff --git a/phylogenetic/Snakefile b/phylogenetic/Snakefile
@@ -56,11 +56,14 @@ if config.get("deploy_url", False):
 
     include: "workflow/snakemake_rules/nextstrain_automation.smk"
 
+
 # Include custom rules defined in the config.
 if "custom_rules" in config:
     for rule_file in config["custom_rules"]:
+
         include: rule_file
 
+
 rule clean:
     message:
         "Removing directories: {params}"

diff --git a/phylogenetic/profiles/ci/copy_example_data.smk b/phylogenetic/profiles/ci/copy_example_data.smk
@@ -11,4 +11,5 @@ rule copy_example_data:
         cp -f {input.metadata} {output.metadata}
         """
 
-ruleorder: copy_example_data > decompress
+
+ruleorder: copy_example_data > decompress