Code

Add scripts for NCBI Virus#16

Code

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joverlee521 merged 13 commits intomainnextstrain/ingest:mainfrom ncbi-virusnextstrain/ingest:ncbi-virusCopy head branch name to clipboardAug 29, 2023

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Commits

Commits on Aug 21, 2023

• Copy ncbi-virus-url from monkeypox

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• ncbi-virus-url: Remove references to mpox

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• ncbi-virus-url: update help message for --ncbi-taxon-id

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• ncbi-virus-url: Add --filters option

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• ncbi-virus-url: Add --fields option

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• Add example of all fields for NCBI Virus

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• Copy csv-to-ndjson from ncov-ingest

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• Copy fetch-from-ncbi-virus from monkeypox

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Commits on Aug 24, 2023

• fetch-from-ncbi-virus: use ncbi-virus-url

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• fetch-from-ncbi-virus: Add usage docs

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• csv-to-ndjson: Add usage docs

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• ncbi-virus-url: Add updated as an output column

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• fetch-from-ncbi-virus: Add github_repo argument

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