export v1: Add deprecation warning, remove --metadata-id-columns
#1534
victorlinci.yaml
on: pull_request
Matrix: pytest-cram
build-docs
/
build-conda
0s
build-docs
/
build-pip
1m 30s
Matrix: pathogen-ci
codecov
0s
Annotations
17 errors, 20 warnings, and 1 notice
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test-pathogen-repo-ci (monkeypox)
Failed to execute ["/home/runner/micromamba-bin/micromamba create -n augur -y --log-level warning \"nextstrain-base\""]: Error: The process '/home/runner/micromamba-bin/micromamba' failed with exit code 1
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test (python=3.8 biopython=1.80)
The run was canceled by @victorlin.
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test (python=3.8 biopython=1.80)
The operation was canceled.
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test (python=3.9 biopython=1.79)
The run was canceled by @victorlin.
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test (python=3.9 biopython=1.79)
The operation was canceled.
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test (python=3.8 biopython=1.76)
The run was canceled by @victorlin.
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test (python=3.8 biopython=1.76)
The operation was canceled.
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test (python=3.8 biopython=1.79)
The run was canceled by @victorlin.
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test (python=3.8 biopython=1.79)
The operation was canceled.
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test (python=3.7 biopython=1.76)
The run was canceled by @victorlin.
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test (python=3.7 biopython=1.76)
The operation was canceled.
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test (python=3.7 biopython=latest)
The run was canceled by @victorlin.
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test (python=3.7 biopython=latest)
The operation was canceled.
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test (python=3.9 biopython=1.80)
The run was canceled by @victorlin.
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test (python=3.9 biopython=1.80)
The operation was canceled.
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test (python=3.8 biopython=latest)
The run was canceled by @victorlin.
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test (python=3.8 biopython=latest)
The operation was canceled.
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test-pathogen-repo-ci (monkeypox)
No files were found with the provided path: auspice/
results/
benchmarks/
logs/
.snakemake/log/. No artifacts will be uploaded.
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test-pathogen-repo-ci (ebola)
() => executeBash(`curl ${curlOpts} | tar ${tarOpts} > ${PATHS.micromambaExe}`) failed, retrying in 2000 seconds: Error: Failed to execute ["bash",["-eo","pipefail","-c","curl https://micro.mamba.pm/api/micromamba/linux-64/latest -Ls --retry 5 --retry-delay 1 | tar -xj -O bin/micromamba > /home/runner/micromamba-bin/micromamba"]]: Error: The process '/usr/bin/bash' failed with exit code 2
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test-pathogen-repo-ci (lassa)
() => executeBash(`curl ${curlOpts} | tar ${tarOpts} > ${PATHS.micromambaExe}`) failed, retrying in 2000 seconds: Error: Failed to execute ["bash",["-eo","pipefail","-c","curl https://micro.mamba.pm/api/micromamba/linux-64/latest -Ls --retry 5 --retry-delay 1 | tar -xj -O bin/micromamba > /home/runner/micromamba-bin/micromamba"]]: Error: The process '/usr/bin/bash' failed with exit code 2
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test-pathogen-repo-ci (zika)
() => executeBash(`curl ${curlOpts} | tar ${tarOpts} > ${PATHS.micromambaExe}`) failed, retrying in 2000 seconds: Error: Failed to execute ["bash",["-eo","pipefail","-c","curl https://micro.mamba.pm/api/micromamba/linux-64/latest -Ls --retry 5 --retry-delay 1 | tar -xj -O bin/micromamba > /home/runner/micromamba-bin/micromamba"]]: Error: The process '/usr/bin/bash' failed with exit code 2
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test-pathogen-repo-ci (mumps)
() => executeBash(`curl ${curlOpts} | tar ${tarOpts} > ${PATHS.micromambaExe}`) failed, retrying in 2000 seconds: Error: Failed to execute ["bash",["-eo","pipefail","-c","curl https://micro.mamba.pm/api/micromamba/linux-64/latest -Ls --retry 5 --retry-delay 1 | tar -xj -O bin/micromamba > /home/runner/micromamba-bin/micromamba"]]: Error: The process '/usr/bin/bash' failed with exit code 2
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test (python=3.7 biopython=1.73)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.7 biopython=1.79)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.9 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.10 biopython=1.80)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.10 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.11 biopython=1.80)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.11 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.8 biopython=1.80)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.9 biopython=1.79)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.8 biopython=1.76)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.8 biopython=1.79)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.7 biopython=1.76)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.7 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.9 biopython=1.80)
Mamba support is still experimental and can result in differently solved environments!
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test (python=3.8 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
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test-pathogen-repo-ci (monkeypox)
Conda environment setup failed. Cache will not be saved.
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Artifacts
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coverage
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output-avian-flu
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output-ebola
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output-lassa
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output-mumps
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output-ncov
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output-seasonal-flu
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output-zika
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