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filter: Rewrite using SQLite3 #2832

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filter: Rewrite using SQLite3

filter: Rewrite using SQLite3 #2832

Triggered via pull request September 9, 2024 16:52
@victorlinvictorlin
synchronize #1242
victorlin/filter-rewrite-using-sqlite
Status Failure
Total duration 9m 21s
Artifacts 13

ci.yaml

on: pull_request
Matrix: pytest-cram
mypy
47s
mypy
pyright
14s
pyright
build-docs  /  build-conda
0s
build-docs / build-conda
build-docs  /  build-pip
2m 15s
build-docs / build-pip
check-docs
39s
check-docs
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
0s
codecov
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16 errors and 15 warnings
pyright
Process completed with exit code 1.
mypy
Process completed with exit code 1.
test (python=3.11 biopython=1.80)
Process completed with exit code 1.
test (python=3.10 biopython=latest)
Process completed with exit code 1.
test (python=3.10 biopython=1.80)
The job was canceled because "_3_11_1_80" failed.
test (python=3.10 biopython=1.80)
The operation was canceled.
test (python=3.8 biopython=1.80)
The job was canceled because "_3_11_1_80" failed.
test (python=3.8 biopython=1.80)
The operation was canceled.
test (python=3.11 biopython=latest)
The job was canceled because "_3_11_1_80" failed.
test (python=3.11 biopython=latest)
The operation was canceled.
test (python=3.8 biopython=latest)
The job was canceled because "_3_11_1_80" failed.
test (python=3.8 biopython=latest)
The operation was canceled.
test (python=3.9 biopython=1.80)
The job was canceled because "_3_11_1_80" failed.
test (python=3.9 biopython=1.80)
The operation was canceled.
test (python=3.9 biopython=latest)
The job was canceled because "_3_11_1_80" failed.
test (python=3.9 biopython=latest)
The operation was canceled.
pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (ebola)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (tb)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (seasonal-cov)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1242/merge, Key: 2024-09-09-linux-64-augur-args-30d39f4-root-dcc80ee, Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee

Artifacts

Produced during runtime
Name Size
output-avian-flu
93.3 KB
output-dengue
1.32 MB
output-ebola
112 KB
output-lassa
322 KB
output-measles
3.87 MB
output-mpox
12.7 MB
output-mumps
339 KB
output-ncov
495 KB
output-rsv
9.42 MB
output-seasonal-cov
1.48 MB
output-seasonal-flu
49.1 KB
output-tb
5.03 MB
output-zika
741 KB