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Alessio Milanese edited this page Mar 31, 2018 · 1 revision

Type motus merge to print the merge options.

OPTIONS:

  • -i (FILE), provide a list of profiled samples. example:
motus merge -i sample1.taxonomy,sample2.taxonomy > taxonomy.table
  • -d (DIR), merge all the files within the directory DIR.
  • -o (FILE), output file name, if you don't provide any file than it will print in stdout.
  • -B, print the taxonomy profile in BIOM format.
  • -v (INT), verbose level: 1=error, 2=warning, 3=message, 4+=debugging. The default value is 3.