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Installation

Look at Installation wiki for more information.

Taxonomy profiling of metagenomes and metatranscriptomes

1. Profile one sample;
2. Merge profiles into a table;
3. Explain the resulting profile;
4. Parameters to change the resulting profiles;
5. Increase precision or recall;
6. Profile long reads;
7. Advance usage;
8. Extend the mOTUs database;
9. GTDB taxonomy for the mOTUs;
10. FAQ.

SNV calling

To execute the motus profiler you need to call motus <command> [options]. The possible values for command are:

• map_snv, map reads to the marker gene database, and produce a BAM file suitable for metaSNV;
• snv_call, SNV calling using metaSNV;