2024-12-10

What's Changed

• Source updates
• Cleanup re: Biolink categories by @caufieldjh in #100
• Add 4 taxa taxslim terms by @kevinschaper in #102

New Contributors

• @kevinschaper made their first contribution in #102

Full Changelog: v2024-11-27...v2024-12-10

2024-11-27

Note: release files have changed:

• phenio-relation-graph.tar.gz is now phenio-relation-graph.tsv.gz
• phenio.owl.tar.gz is now phenio.owl.gz (just phenio.owl, but compressed)

What's Changed

• Switch to use uPheno base and import phenotype ontologies separately by @matentzn in #94
• Add a few missing pieces for a working pipeline by @matentzn in #97

Full Changelog: v2024-11-18...v2024-11-27

2024-11-25

Overview

This is a major update, including:

• A full restructuring of imports
• Removal of many dangling edges
• Inclusion of MAXO

Note that phenio.owl is now compressed. The decompressed file is ~2.8G on disk.

What's Changed

• Switch to use uPheno base and import phenotype ontologies separately by @matentzn in #94
• Add a few missing pieces for a working pipeline by @matentzn in #97

Full Changelog: v2024-11-18...v2024-11-25

2024-11-18

What's Changed

• Fix ODK version so it needs to be explicitly by @matentzn in #93
• Remove relax step from PHENIO by @matentzn in #92

Full Changelog: v2024-11-01...v2024-11-18

2024-11-05

What's Changed

• Source updates:
  • Upheno (https://github.com/obophenotype/upheno-dev/releases/tag/v2024-11-02)

Full Changelog: v2024-09-04b...v2024-11-05

2024-11-01

What's Changed

• General repo updates (for Nov 1 release) by @caufieldjh in #89
• • Source updates, including:
  • new Upheno2 (https://github.com/obophenotype/upheno-dev/releases/tag/v2024-10-31)
  • new Mondo (https://github.com/monarch-initiative/mondo/releases/tag/v2024-10-01)

Full Changelog: v2024-09-04b...v2024-11-01

2024-09-04

What's Changed

• Source updates, including:
  • new Upheno2 (https://github.com/obophenotype/upheno-dev/releases/tag/v2024-09-04)
  • new Mondo (https://github.com/monarch-initiative/mondo/releases/tag/v2024-09-03)

Full Changelog: v2024-08-02...v2024-09-04

2024-08-09

In case of any confusion, this release includes MA and EMAPA.

What's Changed

• Fix #75 again by @caufieldjh in #83
• More docs workflow fixes by @caufieldjh in #84

Full Changelog: v2024-08-02...v2024-08-09

2024-09-04 RC1

NOTE: This is a pre-release using the v2024-09-03 Upheno2 source (https://github.com/obophenotype/upheno-dev/releases/download/v2024-09-03/upheno.owl). It does not contain the full set of direct phenotype relations.

What's Changed

• Updates for Upheno
• Other source updates

Full Changelog: v2024-08-09...v2024-09-04

2024-08-02

Note: this build is missing some imports due to technical errors. Do not use in production.

What's Changed

• Documentation updates by @caufieldjh in #73
• Update docs again; add missing placeholders by @caufieldjh in #74
• Fix #75 by @caufieldjh in #76
• Restructure docs deployment again by @caufieldjh in #77
• One more fix for docs workflow by @caufieldjh in #78
• Stop excluding OBO IRIs by @caufieldjh in #80
• General fixes and update for current build; PATO placeholders by @caufieldjh in #81

Full Changelog: v2024-06-06...v2024-08-02