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Update Synonyms of cholesterol embolism #8386

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Nov 14, 2024
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Update Synonyms of cholesterol embolism #8386

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a84bed3
Update Synonyms of cholesterol embolism
yshwetar Nov 14, 2024
30b2ff9
updated synonyms scopes
sabrinatoro Nov 14, 2024
23e8caf
Update mondo-edit.obo
sabrinatoro Nov 14, 2024
cb20065
Update mondo-edit.obo
sabrinatoro Nov 14, 2024
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8 changes: 5 additions & 3 deletions src/ontology/mondo-edit.obo
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Expand Up @@ -31153,11 +31153,15 @@ property_value: IAO:0000589 "bacteriuria (disease)" xsd:string
id: MONDO:0001883
name: blue toe syndrome
def: "A condition that is caused by recurring atheroembolism in the lower extremities. It is characterized by cyanotic discoloration of the toes, usually the first, fourth, and fifth toes. Discoloration may extend to the lateral aspect of the foot. Despite the gangrene-like appearance, blue toes may respond to conservative therapy without amputation." [MESH:D018438]
synonym: "purple toe syndrome" EXACT [DOID:1461]
synonym: "trash foot" EXACT [DOID:1461]
synonym: "warfarin blue toe syndrome" EXACT [DOID:1416]
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@sabrinatoro sabrinatoro Nov 14, 2024 •
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@yshwetar these synonyms should not be on this term with DOID:1461 as an x-ref because DOID:1461 is not an equivalent mapping

xref: DOID:14121 {source="MONDO:equivalentTo"}
xref: MEDGEN:66940 {source="MONDO:equivalentTo", source="MONDO:MEDGEN"}
xref: MESH:D018438 {source="MONDO:equivalentTo", source="DOID:14121"}
xref: UMLS:C0242645 {source="MONDO:equivalentTo", source="MONDO:MEDGEN", source="MEDGEN:66940"}
is_a: MONDO:0005568 {source="DOID:14121", source="MESH:D018438"} ! cholesterol embolism
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/8049" xsd:string

[Term]
id: MONDO:0001884
Expand Down Expand Up @@ -108056,9 +108060,6 @@ def: "Blocking of a blood vessel by cholesterol-rich atheromatous deposits, gene
subset: otar {source="MONDO:OTAR"}
synonym: "atheroembolism" EXACT [DOID:1461]
synonym: "cholesterol crystal embolism" EXACT [DOID:1461]
synonym: "purple toe syndrome" EXACT [DOID:1461]
synonym: "trash foot" EXACT [DOID:1461]
synonym: "warfarin blue toe syndrome" EXACT [DOID:1461]
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I agree that these should not be exact, even though they are reported as synonym in DO.
Instead of removing them, we should update the synonym scope to "narrow synonym" since the synonyms refers to a child term of this term.

xref: DOID:1461 {source="EFO:0005801", source="MONDO:equivalentTo"}
xref: EFO:0005801 {source="MONDO:equivalentTo", source="MONDO:EFO"}
xref: ICD10CM:I75 {source="DOID:1461"}
Expand All @@ -108071,6 +108072,7 @@ xref: SCTID:307406004 {source="EFO:0005801", source="MONDO:equivalentTo"}
xref: UMLS:C0149649 {source="MONDO:equivalentTo", source="MONDO:MEDGEN", source="MEDGEN:57437"}
is_a: MONDO:0005385 {source="DOID:1461", source="MESH:D017700/inferred"} ! vascular disorder
relationship: disease_has_location UBERON:0001981 {source="EFO:0000784"} ! blood vessel
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/8049" xsd:string

[Term]
id: MONDO:0005569
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