Update Synonyms of cholesterol embolism #8386
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Closes #8049 Cholesterol Embolism primarily occurs in the lower extremities, mainly the toes. However, can arise anywhere - thus 'purple toe syndrome', 'trash foot', and 'warfarin blue toe syndrome' were moved to be synonyms of 'Blue toe syndrome'. Also added term tracker to both
sabrinatoro
reviewed
Nov 14, 2024
There was a problem hiding this comment.
@yshwetar please take a look at the comments and let me know if you need more explanations. I can make the updates in the ontology.
| @@ -31153,11 +31153,15 @@ property_value: IAO:0000589 "bacteriuria (disease)" xsd:string | |||
| id: MONDO:0001883 | |||
| name: blue toe syndrome | |||
| def: "A condition that is caused by recurring atheroembolism in the lower extremities. It is characterized by cyanotic discoloration of the toes, usually the first, fourth, and fifth toes. Discoloration may extend to the lateral aspect of the foot. Despite the gangrene-like appearance, blue toes may respond to conservative therapy without amputation." [MESH:D018438] | |||
| synonym: "purple toe syndrome" EXACT [DOID:1461] | |||
| synonym: "trash foot" EXACT [DOID:1461] | |||
| synonym: "warfarin blue toe syndrome" EXACT [DOID:1416] | |||
There was a problem hiding this comment.
@yshwetar these synonyms should not be on this term with DOID:1461 as an x-ref because DOID:1461 is not an equivalent mapping
| @@ -108056,9 +108060,6 @@ def: "Blocking of a blood vessel by cholesterol-rich atheromatous deposits, gene | |||
| subset: otar {source="MONDO:OTAR"} | |||
| synonym: "atheroembolism" EXACT [DOID:1461] | |||
| synonym: "cholesterol crystal embolism" EXACT [DOID:1461] | |||
| synonym: "purple toe syndrome" EXACT [DOID:1461] | |||
| synonym: "trash foot" EXACT [DOID:1461] | |||
| synonym: "warfarin blue toe syndrome" EXACT [DOID:1461] | |||
There was a problem hiding this comment.
I agree that these should not be exact, even though they are reported as synonym in DO.
Instead of removing them, we should update the synonym scope to "narrow synonym" since the synonyms refers to a child term of this term.
sabrinatoro
approved these changes
Nov 14, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Closes #8049
Cholesterol Embolism primarily occurs in the lower extremities, mainly the toes. However, can arise anywhere - thus 'purple toe syndrome', 'trash foot', and 'warfarin blue toe syndrome' were moved to be synonyms of 'Blue toe syndrome'.
Also added term tracker to both