vectorizing calculation of rotation matrices from RELION Euler angles #143
Workflow file for this run
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name: CI Testing | |
on: | |
push: | |
branches: [ develop ] | |
tags: | |
- '[0-9]+\.[0-9]+\.[0-9]+' | |
- '[0-9]+\.[0-9]+\.[0-9]+-*' | |
pull_request: | |
branches: [ main ] | |
jobs: | |
run_tests: | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
python: [ '3.9', '3.10', '3.11' ] | |
os: [ macos-latest, ubuntu-latest ] | |
include: | |
- python: '3.9' | |
torch: '1.12' | |
- python: '3.10' | |
torch: '2.1' | |
- python: '3.11' | |
torch: '2.4' | |
fail-fast: false | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python }} | |
- name: Install cryoDRGN with pytest dependencies | |
run: | | |
python3 -m pip install --upgrade pip | |
python3 -m pip install pytest-xdist | |
python3 -m pip install . | |
python3 -m pip uninstall -y torch | |
python3 -m pip cache purge | |
python3 -m pip install torch==${{ matrix.torch }} | |
- name: Pytest | |
run: | | |
pytest -v -n2 --dist=loadscope |