Conda environment setup for TDC. Also installs cellxgene-census #220
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To install tdc, simply run
conda env create -f environment.yml
...
Tested
Successfully installed PyTDC-0.4.1 aiobotocore-2.11.2 aiohttp-3.9.3 aioitertools-0.11.0 aiosignal-1.3.1 anndata-0.10.5.post1 array-api-compat-1.4.1 async-timeout-4.0.3 attrs-23.2.0 botocore-1.34.34 cellxgene-census-1.10.2 exceptiongroup-1.2.0 frozenlist-1.4.1 get-annotations-0.1.2 h5py-3.10.0 jmespath-1.0.1 llvmlite-0.42.0 multidict-6.0.5 natsort-8.4.0 networkx-3.2.1 numba-0.59.0 pyarrow-12.0.1 pyarrow-hotfix-0.6 pynndescent-0.5.11 rdkit-pypi-2022.9.5 s3fs-2024.2.0 scanpy-1.9.8 seaborn-0.13.2 session-info-1.0.0 somacore-1.0.7 stdlib_list-0.10.0 tiledb-0.25.0 tiledbsoma-1.7.2 umap-learn-0.5.5 urllib3-1.26.18 wrapt-1.16.0 yarl-1.9.4
done
To activate this environment, use
$ conda activate tdc-conda-env
To deactivate an active environment, use
$ conda deactivate
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To install tdc, simply run
conda env create -f environment.ymlTest below
...
Successfully installed PyTDC-0.4.1 aiobotocore-2.11.2 aiohttp-3.9.3 aioitertools-0.11.0 aiosignal-1.3.1 anndata-0.10.5.post1 array-api-compat-1.4.1 async-timeout-4.0.3 attrs-23.2.0 botocore-1.34.34 cellxgene-census-1.10.2 exceptiongroup-1.2.0 frozenlist-1.4.1 get-annotations-0.1.2 h5py-3.10.0 jmespath-1.0.1 llvmlite-0.42.0 multidict-6.0.5 natsort-8.4.0 networkx-3.2.1 numba-0.59.0 pyarrow-12.0.1 pyarrow-hotfix-0.6 pynndescent-0.5.11 rdkit-pypi-2022.9.5 s3fs-2024.2.0 scanpy-1.9.8 seaborn-0.13.2 session-info-1.0.0 somacore-1.0.7 stdlib_list-0.10.0 tiledb-0.25.0 tiledbsoma-1.7.2 umap-learn-0.5.5 urllib3-1.26.18 wrapt-1.16.0 yarl-1.9.4
done
To activate this environment, use
To deactivate an active environment, use
$ conda deactivate