Merge pull request #220 from mims-harvard/avelez-dev

Conda environment setup for TDC. Also installs cellxgene-census
mims-harvard · Feb 23, 2024 · ddb4f2e · ddb4f2e
2 parents 10865f6 + beeb089
commit ddb4f2e
Showing 1 changed file with 20 additions and 0 deletions.
diff --git a/environment.yml b/environment.yml
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+name: tdc-conda-env 
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - dataclasses=0.8
+  - fuzzywuzzy=0.18.0
+  - huggingface_hub=0.20.3
+  - numpy=1.26.4
+  - python=3.9.13
+  - pip=23.3.1
+  - pandas=2.1.4
+  - rdkit=2023.9.5
+  - requests=2.31.0
+  - scikit-learn=1.3.0
+  - seaborn=0.12.2
+  - tqdm=4.65.0
+  - pip:
+    - cellxgene-census==1.10.2 
+    - PyTDC==0.4.1