Code

E) with neutral advection#6

Code

Open

mikekryjak wants to merge 119 commits intomastermikekryjak/hermes-3:masterfrom E-AFN-neutral-advectionmikekryjak/hermes-3:E-AFN-neutral-advectionCopy head branch name to clipboard

+1,694-161

Commits

Commits on Aug 9, 2023

• neutral_mixed: model improvements

  Show description for 7e52f2c
  bendudson

  committed
  7e52f2c

• neutral_mixed: Missed factor of 2/3

  Show description for 0682b56
  bendudson

  committed
  0682b56

Commits on Aug 11, 2023

• Adding isotropic flux limiters

  Show description for a6ada66
  bendudson

  committed
  a6ada66

• neutral_mixed: Fix and enable flux limit by default

  Show description for 769ff8b
  bendudson

  committed
  769ff8b

Commits on Aug 16, 2023

• Merge branch 'master' into neutral-model

  mikekryjak

  committed
  05c0433

• Add flags for individual neutral flux limiters

  mikekryjak

  committed
  98c85a0

Commits on Aug 17, 2023

• Allow suppression of momentum and heat flux factor

  mikekryjak

  committed
  321a0a6

Commits on Aug 29, 2023

• Add option disabling neutral MFP=0.1m

  Show description for 609b95c
  mikekryjak

  committed
  609b95c

Commits on Aug 30, 2023

• Make maximum diffusion MFP a user input

  Show description for ffb5368
  mikekryjak

  committed
  ffb5368

Commits on Sep 2, 2023

• neutral_mixed: Minor tidying of maximum_mfp

  Show description for 2655106
  bendudson

  committed
  2655106

• neutral_mixed: Modify flux limiters

  Show description for b456558
  bendudson

  committed
  b456558

• neutral_mixed: Add flux_factor_timescale option

  Show description for eff93f1
  bendudson

  committed
  eff93f1

• Merge branch 'master' into neutral-model

  mikekryjak

  committed
  c8a7051

Commits on Oct 4, 2023

• Merge commit 'c8a70511d629f585bd1844914ff6813f3161fc7c' into HEAD

  mikekryjak

  committed
  38f53bf

Commits on Oct 5, 2023

• Allow separate limiters for conduction and convection

  mikekryjak

  committed
  349808c

• Fixes in separate neutral heat flux limiters

  mikekryjak

  committed
  16c24a4

• Add ability to limit momentum

  mikekryjak

  committed
  3fb5136

Commits on Oct 8, 2023

• Merge branch 'master' into B_chained_noedgeflux

  mikekryjak

  committed
  ff52e53

Commits on Oct 11, 2023

• Significant change in AFN implementation

  Show description for 32c7a73
  bendudson

  committed
  32c7a73

Commits on Oct 12, 2023

• Another AFN rework

  Show description for 435542e
  mikekryjak

  committed
  435542e

Commits on Nov 7, 2023

• Temporarily disable kappa/eta limitation to prevent crashes

  mikekryjak

  committed
  ac1f0b3

Commits on Nov 10, 2023

• Add diagnostics for neutral pressure terms

  mikekryjak

  committed
  5d6e222

Commits on Nov 14, 2023

• Add flag for 5/3 in perp advection (compression?)

  mikekryjak

  committed
  83d6f32

Commits on Nov 15, 2023

• Multiple forms of perp neutral pressure terms

  mikekryjak

  committed
  7d9330b

Commits on Nov 18, 2023

• Add full v div P form to perp Pd transp.

  mikekryjak

  committed
  922d184

Commits on Nov 20, 2023

• Fix signs in neutral perp terms

  mikekryjak

  committed
  1c5ac46

• Fix sign in form 3, initialise with 0s

  mikekryjak

  committed
  21479dc

• Fix perp_pressure_form being bool by accident

  mikekryjak

  committed
  0b36e99

• Add perp compression diagnostic

  mikekryjak

  committed
  90fe9ea

Commits on Dec 5, 2023

• Enable ability to disable NVn in 2D

  mikekryjak

  committed
  7cbdee4

Commits on Dec 13, 2023

• Save individual collision frequencies to state

  Show description for 357ea18
  mikekryjak

  committed
  357ea18

• Add individual collision tracking to hydrogen cx

  mikekryjak

  committed
  38d3f71

• Change individual collision notation for consistency

  mikekryjak

  committed
  6277808

Commits on Dec 14, 2023

• Improve comments and diagnostic metadata clarity

  mikekryjak

  committed
  0fd1c27

Commits on Dec 15, 2023

• Add collision frequency to amjuel reactions

  mikekryjak

  committed
  e19351d

Commits on Feb 18, 2024

• Edit gitignore

  mikekryjak

  committed
  ed34f40

• Merge master

  mikekryjak

  committed
  170e327

• Fix duplicate declaration

  mikekryjak

  committed
  ef477e3

Commits on Feb 19, 2024

• Allow original equation form for perp cond

  mikekryjak

  committed
  55bace0

Commits on Feb 20, 2024

• Add ability to switch to original kappa and eta forms

  mikekryjak

  committed
  17e91a0

Commits on Feb 26, 2024

• Add ability to change to upwind operators for neut perp transport

  mikekryjak

  committed
  18700d8

Commits on Mar 2, 2024

• neutral_mixed: Add FV::Div_a_Grad_perp_limit operator

  Show description for a1d1e79
  bendudson

  committed
  a1d1e79

Commits on Mar 6, 2024

• neutral_mixed: Switch perpendicular limiter to Upwind

  Show description for 9c2e871
  bendudson

  committed
  9c2e871

Commits on Mar 27, 2024

• neutral_mixed: Modify Div_a_Grad_perp_limit operator

  Show description for bcfb164
  bendudson

  committed
  bcfb164

Commits on Mar 28, 2024

• neutral_boundary: Fix typos in fast reflection coefficients

  Show description for 1ec6be0
  bendudson

  committed
  1ec6be0

• neutral_mixed: Change parallel to Upwind

  Show description for fec8232
  bendudson

  committed
  fec8232

Commits on Mar 29, 2024

• Merge branch 'master' into E-AFN-only-diff

  mikekryjak

  committed
  613c9ce

• Merge branch 'neutral-advection' into E-afn-neutral-advection

  mikekryjak

  committed
  b3ce303

• Fix typos

  mikekryjak

  committed
  f341884

• Fix merge issues

  mikekryjak

  committed
  fdede05

• Fix missing DnnTn

  mikekryjak

  committed
  4eba818

Commits on Mar 30, 2024

• Prevent double counting conduction

  mikekryjak

  committed
  689741c

Commits on Apr 10, 2024

• neutral_mixed: Use Div_a_Grad_perp_upwind_flows

  Show description for 48a8db9
  bendudson

  committed
  48a8db9

Commits on Apr 12, 2024

• Add flag to suppress lax flux

  Show description for 7eb92e7
  mikekryjak

  committed
  7eb92e7

Commits on Apr 13, 2024

• neutral_mixed: improvements/diags for flooring

  Show description for b9d8fb9
  mikekryjak

  committed
  b9d8fb9

Commits on Apr 17, 2024

• Merge branch 'neutral-advection' into E-AFN-neutral-advection

  mikekryjak

  committed
  5118c3e

Commits on Apr 18, 2024

• Merge branch 'master' into neutral-advection

  mikekryjak

  committed
  e73bc59

Commits on May 1, 2024

• Merge branch 'master' into selective-collisions

  mikekryjak

  committed
  c243ec3

• Fix species collisions being added in wrong place

  mikekryjak

  committed
  e2461df

• Take out IZ/REC collisions from collision sums

  Show description for 03bd9f8
  mikekryjak

  committed
  03bd9f8

• Implement new collisions into 1D neutral diffusion

  mikekryjak

  committed
  fd8c109

Commits on May 2, 2024

• Merge branch 'master' into selective-collisions

  mikekryjak

  committed
  b666507

Commits on May 3, 2024

• Enable Braginskii collisionality in 1D neutral diffusion

  mikekryjak

  committed
  a27e9de

• Add underscore between species in collision names

  Show description for af3b6f9
  mikekryjak

  committed
  af3b6f9

• Prevent IZ, REC as registering collisions with electrons

  mikekryjak

  committed
  9622895

Commits on May 8, 2024

• Add collision selector and Braginskii mode for conduction

  mikekryjak

  committed
  5f35bc4

• Improve conduction collisionality useability and prints

  Show description for d2ddd9a
  mikekryjak

  committed
  d2ddd9a

Commits on May 9, 2024

• Fix typo in CX collision registering

  mikekryjak

  committed
  30116eb

• Minor print fix

  mikekryjak

  committed
  64b1a9a

• Refactor conduction and diffusion collision matching

  mikekryjak

  committed
  539e952

Commits on May 10, 2024

• Implement collision selection in viscosity

  mikekryjak

  committed
  754294d

• Fix a few comments

  mikekryjak

  committed
  930eecb

• Ensure conduction only considers CX, IZ for neutrals

  mikekryjak

  committed
  2925d03

• Merge branch 'master' into selective-collisions

  mikekryjak

  committed
  f61366a

• Fix viscosity collisionality print

  mikekryjak

  committed
  8a8af5c

Commits on May 20, 2024

• Switch ions to i-i onlky

  mikekryjak

  committed
  e4a8963

Commits on May 22, 2024

• Hardcode correct use of Nnlim and Pnlim in perp neutral advection

  mikekryjak

  committed
  b50e4fa

• Calculate neutral Pnfloor from Nnfloor like evolve_density

  mikekryjak

  committed
  b31b18e

• Fix comment and blank lines

  mikekryjak

  committed
  8adb4b6

• Merge branch 'master' into selective-collisions

  mikekryjak

  committed
  0a2b058

Commits on May 23, 2024

• Improve 1D neutral cond/visc flag names

  mikekryjak

  committed
  e652bf7

• Fix typo

  mikekryjak

  committed
  967ef3e

Commits on May 24, 2024

• Merge branch 'neutral-advection' into E-AFN-neutral-advection

  mikekryjak

  committed
  0b775ec

• Fix typo: visc and cond must be driven by perp gradients!!!

  Show description for e7c5708
  mikekryjak

  committed
  e7c5708

Commits on May 26, 2024

• Enable selective collisions for 2D neutral transport

  mikekryjak

  committed
  8ad24b8

Commits on May 28, 2024

• Change energy flow diagnostic factor from 3/2 to 5/2

  Show description for b8accfe
  mikekryjak

  committed
  b8accfe

• Change conduction to upwind and expose fluxes

  mikekryjak

  committed
  0aa087b

• Add comments on flow diags and fix conduction one

  mikekryjak

  committed
  2027118

• Fix typo

  mikekryjak

  committed
  c095e43

Commits on Jul 5, 2024

• Updated to latest next

  bendudson

  committed
  36460b0

• unit tests: Fix FakeMesh

  Show description for c6fe723
  bendudson

  committed
  c6fe723

Commits on Jul 8, 2024

• Add C to CMake to prevent SUNDIALS-related find MPI_C bug

  mikekryjak

  committed
  7407e35

• Bugfix: make electron conduction kappa Braginskii consistent

  mikekryjak

  committed
  baf4606

Commits on Aug 1, 2024

• Add flag to suppress outflow (currently incorrect)

  Show description for 155f10e
  mikekryjak

  committed
  155f10e

Commits on Aug 7, 2024

• Merge branch 'master' into selective-collisions

  mikekryjak

  committed
  46f69e6

Commits on Aug 12, 2024

• Merge branch 'master' into E-AFN-neutral-advection

  mikekryjak

  committed
  b286892

• Merge branch 'selective-collisions' into E-AFN-neutral-advection

  mikekryjak

  committed
  167fb1c

• Fix merge

  mikekryjak

  committed
  33b90e7

• Another quick merge fix

  mikekryjak

  committed
  bffaca2

Commits on Aug 13, 2024

• Remove unnecessary prints

  mikekryjak

  committed
  65be93e

• Merge branch 'selective-collisions' into E-AFN-neutral-advection

  mikekryjak

  committed
  60219cb

Commits on Aug 19, 2024

• Merge branch 'master' into neutral-advection

  mikekryjak

  committed
  f5e1e98

• Fix multiple declaration

  mikekryjak

  committed
  784fa0d

• Fix segfaults

  mikekryjak

  committed
  0220572

• Add Div_a_Grad_perp_flows

  Show description for 81a5dcd
  mikekryjak

  committed
  81a5dcd

• Added warnings on upwinding/limiting Div_a_Grad_perp operators

  Show description for 853973f
  mikekryjak

  committed
  853973f

• Revert to Div_a_Grad_perp, add flows

  Show description for 620c914
  mikekryjak

  committed
  620c914

• Revert to Div_a_Grad_perp, add flows

  Show description for 6eb0a04
  mikekryjak

  committed
  6eb0a04

• Merge branch 'neutral-advection' of https://github.com/bendudson/hermes-3 into neutral-advection

  mikekryjak

  committed
  d709eac

Commits on Aug 20, 2024

• Merge branch 'E-AFN-neutral-advection' of https://github.com/mikekryjak/hermes-3 into E-AFN-neutral-advection

  mikekryjak

  committed
  66a64f3

Commits on Aug 22, 2024

• Merge branch 'master' into E-AFN-neutral-advection

  mikekryjak

  committed
  68a4c1d

• Fix mistakenly pasted operator code

  mikekryjak

  committed
  843c609

• Fix mistakenly pasted operator lines

  mikekryjak

  committed
  ad38d73

• Merge branch 'master' into E-AFN-neutral-advection

  mikekryjak

  committed
  301f15b

Commits on Sep 4, 2024

• Merge remote-tracking branch 'origin/neutral-advection' into E-AFN-neutral-advection

  mikekryjak

  committed
  9d059d1

• Merge remote-tracking branch 'origin/upgrade-bout' into E-AFN-neutral-advection

  mikekryjak

  committed
  1d11310

• Switch perp_operator=0 to one with flows and fix merge issues

  mikekryjak

  committed
  6a981be

• Merge branch 'E-AFN-neutral-advection' of https://github.com/mikekryjak/hermes-3 into E-AFN-neutral-advection

  mikekryjak

  committed
  da7743d

Commits on Sep 6, 2024

• Fix segfault

  mikekryjak

  committed
  fdd1e07