3.0.1

• Fix merge_kofamscan_hits.py

3.0.0

• Use prodigal for gene prediction for EggNOG and KofamScan;
• Fix "Contig ID length" error (prokka);
• Improved merge_eggnog_mapper.py;
• Limits and hardware requirements updated;
• new --metagenome option;
• new --skip_prokka option
• new --eggnog_dbmem option;
• --prokka_metagenome option removed.

2.2.0

• eggnog-mapper 2.1.4
• Fix diamond's "Illegal instruction" error in eggnog-mapper
• Merge results in count matrices

2.1.3

• Anvi'o Kofam: handle invalid charachters in input FASTA

2.1.2

• Anvi'o Kofam: simplify deflines in FASTA before annotation
• Minor changes

2.1.1

• Fix Anvi'o Kofam process

2.1.0

• Kofam annotation with Anvi'o and pathway completeness estimation added;
• Automatic database download for Anvi'o, eggNOG and KofamScan.

2.0.0

• Prokka is now the default;
• Optionally run eggNOG and/or KofamScan.

1.0.0

First stable release.