0.4

Version 0.4:

• Wiggle output for statistics, signal level, coverage and more
• Better homo-polymer correction (as well as all ambiguous indels)
• Support for mapping with BWA-MEM (and easier incorporation of any mapper that outputs SAM)
• Batched alignment calls (Should greatly accelerate alignment for larger genomes)
• Separated alignment and re-squiggle code into separate processes linked via queues
• Several code optimizations
• Bug fixes