Bump version to 0.4

marcus1487 · Jan 17, 2017 · c58c3fa · c58c3fa
1 parent c41f015
commit c58c3fa
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/docs/conf.py b/docs/conf.py
@@ -55,9 +55,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = u'0.3.1'
+version = u'0.4'
 # The full version, including alpha/beta/rc tags.
-release = u'0.3.1'
+release = u'0.4'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/docs/resquiggle.rst b/docs/resquiggle.rst
@@ -4,7 +4,7 @@ Genome Re-squiggle
 `genome_resquiggle`
 -------------------
 
-This command re-annotates raw signal to match continguous genomic bases with contiguous sections ("Events") of raw signal. The algorithm begins with a genomic alignment (currently graphmap) produced by the `genome_resquiggle` command. The full algorithm is described in detail within the manuscript describing nanoraw (`Pre-print manuscript <http://biorxiv.org/content/early/2016/12/15/094672>`_).
+This command re-annotates raw signal to match continguous genomic bases with contiguous sections ("Events") of raw signal. The algorithm begins with a genomic alignment (currently graphmap or bwa-mem) produced by the `genome_resquiggle` command. The full algorithm is described in detail within the manuscript describing nanoraw (`Pre-print manuscript <http://biorxiv.org/content/early/2016/12/15/094672>`_).
 
 Required positional arguments for this command are (in order) `fast5_basedir` which specifies a directory containing FAST5 files to process and `genome_fasta` specifying the FASTA file to which mapping should be computed. Additionally, either a bwa or graphmap executable is required (e.g. `--graphmap-executable ./graphmap` or `--bwa-mem-executable ./bwa` assuming the binary is linked to the current directory).
 

diff --git a/nanoraw/resquiggle.py b/nanoraw/resquiggle.py
@@ -39,7 +39,7 @@ def _redirect_stderr(to):
         _redirect_stderr(old_stderr)
 
 
-NANORAW_VERSION = '0.3.1'
+NANORAW_VERSION = '0.4'
 VERBOSE = False
 
 # allow this many times the alignment batch size into the queue of

diff --git a/setup.py b/setup.py
@@ -6,7 +6,7 @@ def readme():
 
 setup(
     name = "nanoraw",
-    version = "0.3.1",
+    version = "0.4",
     packages = ["nanoraw"],
     install_requires = ['h5py', 'rpy2', 'numpy', 'scipy'],