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1. StrainSort_pipeline StrainSort_pipeline Public

   The StrainSort pipeline was created for use with complex multi-strain samples. StrainSort can identify the strains within you sample, estimate the abundance of each strain within the sample and per…

   Java 1

2. crypto_diversity_workshop crypto_diversity_workshop Public

   Shell 1

3. cape-resistome-lod-exp1 cape-resistome-lod-exp1 Public

   Finding the limit of detection with dilution series of resistome mock communities and dilution series of hybridization capture baits

   Perl

4. Glenn_lab_demux Glenn_lab_demux Public

   Protocol for demultiplexing in the Glenn Lab

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5. tb-snp-per-gene tb-snp-per-gene Public

   Getting the snps per gene from assembled genomes

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6. nf-core-strainsort nf-core-strainsort Public

   Nextflow