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feat(preprocessing): parse dates into date ranges to correctly represent incomplete dates #3263

Merged
merged 17 commits into from
Dec 2, 2024
Merged

feat(preprocessing): parse dates into date ranges to correctly represent incomplete dates #3263

merged 17 commits into from
Dec 2, 2024

Commits on Dec 2, 2024

  1. First time lucky?

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  2. Second?

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  3. tweaks

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  4. fix dateToSortBy

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  5. Use Ebola Sudan: faster

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  6. fix!

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  7. Format display name ok

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  8. Give upper range if no date

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  9. Update preprocessing/nextclade/tests/test_processing_functions.py

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  10. rename

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  11. Update preprocessing/nextclade/src/loculus_preprocessing/processing_f… 

    …unctions.py

Co-authored-by: Felix Hennig <[email protected]>
    @corneliusroemer @fhennig
    corneliusroemer and fhennig committed Dec 2, 2024
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  12. Update preprocessing/nextclade/tests/test_processing_functions.py

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  13. Date-ranges-test-fixes (#3307) 

    * fix tests

* remove unused case

* Add a test failure description

---------

Co-authored-by: Cornelius Roemer <[email protected]>
    @anna-parker @corneliusroemer
    anna-parker and corneliusroemer committed Dec 2, 2024
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  14. Upgrade deps

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  15. Address review comments

    @corneliusroemer
    corneliusroemer committed Dec 2, 2024
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  16. Update preprocessing/nextclade/src/loculus_preprocessing/processing_f… 

    …unctions.py

Co-authored-by: Anna (Anya) Parker <[email protected]>
    @corneliusroemer @anna-parker
    corneliusroemer and anna-parker authored Dec 2, 2024
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  17. Update kubernetes/loculus/values.yaml

    @corneliusroemer
    corneliusroemer authored Dec 2, 2024
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