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theosanderson committed Dec 14, 2024
1 parent 438be27 commit b421a96
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion kubernetes/loculus/values.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -42,8 +42,11 @@ defaultOrganismConfig: &defaultOrganismConfig
url: "https://clades.nextstrain.org/?input-fasta={{https://metadata-sequence-combiner.vercel.app/api/combine?sequencesUrl={{[unalignedNucleotideSequences|json]}}&metadataUrl={{[metadata|json]}}&fields=displayName}}&dataset-name=nextstrain/ebola/sudan&dataset-server={{https://raw.githubusercontent.com/nextstrain/nextclade_data/ebola/data_output}}"
- name: "Make a renamed fasta with dates"
url: "https://metadata-sequence-combiner.vercel.app/api/combine?sequencesUrl={{[alignedNucleotideSequences|json]}}&metadataUrl={{[metadata|json]}}&fields=displayName,sampleCollectionDate"
- name: "Analyse with Delphy"
- name: "Analyse with Delphy (not working for some reason)"
url: "https://delphy.fathom.info/?https://metadata-sequence-combiner.vercel.app/api/combine?sequencesUrl={{[alignedNucleotideSequences|json]}}&metadataUrl={{[metadata|json]}}&fields=displayName,sampleCollectionDate&filterForValidDateString=sampleCollectionDate"
- name: "Analyse with Delphy (use proxy, works)"
url: "https://delphy.fathom.info/?https://delphy.fathom.info/proxy/metadata-sequence-combiner.vercel.app/api/combine?sequencesUrl={{[alignedNucleotideSequences|json]}}&metadataUrl={{[metadata|json]}}&fields=displayName,sampleCollectionDate&filterForValidDateString=sampleCollectionDate"


earliestReleaseDate:
enabled: true
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