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Releases: labgem/PlaScope

PlaScope v1.3.1

21 Mar 21:50
@duboism duboism
v1.3.1
1213ac1
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PlaScope v1.3.1 Latest
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Nothing new, just updated the doc with the latest publications. Also the data for evaluation are no longer included in the release (you must download them separately).

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PlaScope V1.3

13 Jul 16:37
@duboism duboism
1.3
645a294
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PlaScope V1.3

Minor modifications (mainly to ease integration with BioConda).

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PlaScope V1.2

10 Jul 13:22
@GuilhemRoyer GuilhemRoyer
1.2
9cf4312
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PlaScope V1.2

Correction of the release V1.1

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PlaScope V1.1

30 May 16:18
@GuilhemRoyer GuilhemRoyer
1.1
196bbf8
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PlaScope V1.1

Choice between two modes:
==> mode 1: SPAdes assembly + classification
==> mode 2: only classification (if you have already assembled your genome with SPAdes)

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PlaScope v1.0

30 May 09:44
@GuilhemRoyer GuilhemRoyer
1.0
3f339ac
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PlaScope v1.0

Modifications in contig sorting: contigs with SPAdes coverage < 2 are taken in account and considered as unclassified).

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PlaScope

28 May 11:31
@GuilhemRoyer GuilhemRoyer
0.9
3f339ac
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PlaScope

PlaScope v0.9 uses SPAdes 3.10.1 and Centrifuge 1.0.3 combined to a custom database (347 E. coli chromosome, 3127 plasmids from Enterobacteriaceae) to sort contigs according to their location (i.e. plasmid, chromosome or unclassified).

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