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typo fixes
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FelixErnst committed Dec 7, 2020
1 parent e82449f commit 617637b
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4 changes: 2 additions & 2 deletions .github/workflows/build-book-release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -88,8 +88,8 @@ jobs:
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_12-r-4.0-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_12-r-4.0-
key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_12-r-4.0-pkgUpdate1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE_3_12-r-4.0-pkgUpdate1-

- name: Install BiocManager
run: |
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4 changes: 2 additions & 2 deletions 13-microbiome-exploration.Rmd
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Expand Up @@ -77,8 +77,8 @@ head(getPrevalence(se, rank = "Phylum", detection = 1/100, sort = TRUE,
abund_values = "counts", as_relative = TRUE))
```

The differnence in the naming scheme, is that by default `na.rm = TRUE` is used
for agglomoration in `getPrevalence`, whereas the default for
The difference in the naming scheme, is that by default `na.rm = TRUE` is used
for agglomeration in `getPrevalence`, whereas the default for
`agglomerateByRank` is `FALSE` to prevent accidental data loss.

If you only need the names of the prevalent taxa, `getPrevalentTaxa` is
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