Microbiome Analysis Book

Overview

This is a reference cookbook for performing Microbiome Analysis with Bioconductor in R. This is a book based on R Markdown and bookdown (https://github.com/rstudio/bookdown).

Deployment

For now the book is deployed to GitHub Pages from GitHub Actions. The book can also be build locally:

bookdown::render_book("index.Rmd", "bookdown::gitbook")

To install the necessary dependencis to build to book, please run

BiocManager::install(remotes::local_package_deps(dependencies=TRUE))

Development and Contribtions

To contribute reports, follow the Git flow procedure:

1. Fork the project
2. create a new branch
3. commit changes to the new branch
4. Create a pull request (PR) back to the original repo
5. Fix and discuss issues in the review process

Please note that, chapters should independent of each other.

Code of conduct

Please note that the MiaBook project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.