14-microbiome-diversity.Rmd

# Microbiome Diversity {#microbiome-diversity}

```{r setup, echo=FALSE, results="asis"}
library(rebook)
chapterPreamble()
```


## Alpha diversity



## Beta diversity


### Community comparisons

PERMANOVA and other methods.


### Visualizing beta diversity

Ordination with PCoA, UMAP, and other methods.


## Session Info {-}

```{r sessionInfo, echo=FALSE, results='asis'}
prettySessionInfo()
```