Update main.yml

last try - but will likely need to move to a non-docker version to get more than dry-run (singularity) working
khanlab · Feb 14, 2024 · 82925ab · 82925ab
1 parent db372af
commit 82925ab
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -28,7 +28,7 @@ jobs:
       uses: snakemake/[email protected]
       with:
         directory: .
-        stagein: "pip install --no-deps -r .github/workflows/snakemake_action_requirements.txt"
+        stagein: "pip install --no-deps -r .github/snakebids_action_requirements.txt"
         snakefile: workflow/Snakefile
         args: "--lint"
 
@@ -44,14 +44,14 @@ jobs:
       uses: snakemake/[email protected]
       with:
         directory: .test
-        stagein: "pip install --no-deps -r .github/workflows/snakemake_action_requirements.txt"
+        stagein: "pip install --no-deps -r .github/snakebids_action_requirements.txt"
         snakefile: workflow/Snakefile
         args: "--sdm apptainer --show-failed-logs --cores 1 --all-temp"
 
     - name: Test report
       uses: snakemake/[email protected]
       with:
         directory: .test
-        stagein: "pip install --no-deps -r .github/workflows/snakemake_action_requirements.txt"
+        stagein: "pip install --no-deps -r .github/snakebids_action_requirements.txt"
         snakefile: workflow/Snakefile
         args: "--report report.zip"