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Update main.yml
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fix typo
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akhanf authored Feb 14, 2024
1 parent ecb2c65 commit db372af
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions .github/workflows/main.yml
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ jobs:
uses: snakemake/[email protected]
with:
directory: .
stagein: "ls -a . && ls -a * && pip install --no-deps -r .github/snakemake_action_requirements.txt"
stagein: "pip install --no-deps -r .github/workflows/snakemake_action_requirements.txt"
snakefile: workflow/Snakefile
args: "--lint"

Expand All @@ -44,14 +44,14 @@ jobs:
uses: snakemake/[email protected]
with:
directory: .test
stagein: "pip install --no-deps -r .github/snakemake_action_requirements.txt"
stagein: "pip install --no-deps -r .github/workflows/snakemake_action_requirements.txt"
snakefile: workflow/Snakefile
args: "--sdm apptainer --show-failed-logs --cores 1 --all-temp"

- name: Test report
uses: snakemake/[email protected]
with:
directory: .test
stagein: "pip install --no-deps -r .github/snakemake_action_requirements.txt"
stagein: "pip install --no-deps -r .github/workflows/snakemake_action_requirements.txt"
snakefile: workflow/Snakefile
args: "--report report.zip"

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