Create DeletionPositionRemapping.ipynb

[hyanwong]

See #256

[jeromekelleher]

Looks great, loads of neat stuff in here.

It doesn't look like it has all of the analysis for #256 though? I think the analysis for showing the the Alpha and BA.1 deletion is likely recurrent would be great to include, as it would be a nice thing to discuss in the paper.

[hyanwong]

It doesn't look like it has all of the analysis for #256 though?

Good point. I just added that (well, with a comment to adjust a parameter to show that the cutoff is at nmuts=5)

I think the analysis for showing the Alpha and BA.1 deletion is likely recurrent would be great to include, as it would be a nice thing to discuss in the paper.

We should stress that this is likely recurrent even if the BA.1 deletion is moved into the alpha position, as we do in that analysis (it requires the deletion to be 5x weightier than a SNP)