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26 Open 91 Closed
26 Open 91 Closed
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Issues list

Atropos was stuck while waiting for a subprocess or worker thread to finish
#139 opened Nov 21, 2024 by dgpinheiro
Move CI to github actions
#134 opened Dec 21, 2022 by jdidion
Install Error
#132 opened Dec 21, 2022 by JChristopherEllis
1
defaults not listed in cli docs
#130 opened Jan 16, 2022 by nick-youngblut
detect: --max-reads default
#129 opened Jan 16, 2022 by nick-youngblut
1
Can atropos remove 5' adapter variants that are incomplete from the tail?
#128 opened Aug 7, 2021 by lokapal
5
error while running the detect command
#127 opened Jul 1, 2021 by manasakaringula
2
Bioconda atropos package tied to python 3.6
#123 opened Jan 10, 2021 by gabeng
1
Implement non-internal adapters enhancement
#119 opened Aug 14, 2020 by jdidion
Add configuration option to choose which library to use for reading BAM enhancement
#99 opened May 8, 2020 by jdidion
Add support for output to BAM enhancement
#95 opened Apr 21, 2020 by plijnzaad 2.0
@jdidion
10
Push latest version to DockerHub chore
#93 opened Mar 9, 2020 by jdidion
1
Update sequencing_adapters.fa chore help wanted
#92 opened Feb 10, 2020 by amizeranschi 2.0
Add option to overwrite reads with nextseq low quality enhancement
#82 opened Jun 28, 2019 by jessrosenfield 2.1
1
gzip error code -9, different than issue #62? bug norepro Cannot Reproduce
#78 opened Dec 17, 2018 by pkMyt1
2
option to support -a "ADAPTER;max_error_rate=0.2;min_overlap=5" enhancement
#75 opened Nov 22, 2018 by MarinusVL 2.1
Detect adapters from overhangs of aligned inserts. enhancement
#65 opened Mar 16, 2018 by jdidion 2.0
Add option to disable use of system gzip enhancement
#62 opened Mar 15, 2018 by gmagoon 2.1
@jdidion
3
Trimming Thruplex adapters enhancement
#55 opened Dec 27, 2017 by pkMyt1 2.2
Config file vs cli for parameters enhancement
#53 opened Dec 20, 2017 by pkMyt1 2.1
1
RFE: SImilar options to trimmomatic's CROP enhancement
#50 opened Oct 10, 2017 by lbeltrame 2.1
4
Detect command should determine whether adapters are 5' or 3' enhancement
#26 opened Jun 3, 2017 by jdidion 2.2
9
Improve heuristic detection for short reads enhancement
#25 opened Jun 3, 2017 by jdidion 2.2
1
Improve documentation on known adapters file enhancement
#24 opened Jun 3, 2017 by jdidion 2.2
Automatically detect adapter sequences during trim enhancement
#6 opened Mar 1, 2017 by jdidion 2.1
11
ProTip! Exclude everything labeled bug with -label:bug.