Code

read multiscale groups as datatrees#45

Code

Merged

d-v-b merged 16 commits intomainjanelia-cellmap/fibsem-tools:mainfrom xarray_groupsjanelia-cellmap/fibsem-tools:xarray_groupsCopy head branch name to clipboardMay 4, 2023

+1,273-824

Commits

Commits on Apr 24, 2023

• chore: minor version bump, deps bump

  d-v-b

  committed
  ff1d4cf

Commits on Apr 27, 2023

• feat: use datatree for loading multiscale groups, and refactor xarray io

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  c3d0be7

• fix: correctly set array metadata under 'transform' key in metadata for cosem-flavored array metadata

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  5687230

• feat: support keep_attrs for datatree root objects. probably not the right way to do it, but it's working.

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  2dd456b

Commits on May 3, 2023

• feat: breaking refactor of IO routines

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  6a09665

• fix: don't mutate dicts in multiscale_group

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  2ae89cb

• fix: correct the api of to_xarray to match create_* functions

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  1aa7b90

• test: add tests for to_xarray

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  7a0e533

• test: remove empty core tests file

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  630b5df

• fix: add from __future__ import

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  23687f4

• chore: narrow type of function signature

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  371b275

• fix: working dataarray construction from mrcfile

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  990aa8a

• test: to_dask tests for zarr / n5

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  6f37724

Commits on May 4, 2023

• test: check read_xarray path for mrc

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  e59f0f2

• chore: use cleaner optional type syntax

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  fbfd4ab

• Revert "chore: use cleaner optional type syntax"

  Show description for 712c602
  d-v-b

  committed
  712c602