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Rhoadesj/dev#21

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rhoadesScholar wants to merge 44 commits intomainjanelia-cellmap/dacapo:mainfrom rhoadesj/devjanelia-cellmap/dacapo:rhoadesj/devCopy head branch name to clipboard

+991-214

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Commits on Aug 26, 2023

• feat: better tqdm, training reloading

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Commits on Aug 29, 2023

• feat: numpy version requirement (1.22.3); watershed

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Commits on Aug 30, 2023

• feat: improve training logging

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• Merge branch 'master' into rhoadesj/dev

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Commits on Sep 1, 2023

• feat: stdout logging, version

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Commits on Sep 5, 2023

• feat: validation logging, keep best validation

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Commits on Sep 8, 2023

• WIP: apply.py

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Commits on Sep 11, 2023

• feat: keep actual best scoring dataset

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• feat: ready to debug apply.py

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Commits on Sep 12, 2023

• feat!: add cli for applying models

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• feat!: add cli for applying models

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• feat: apply.py roi

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Commits on Sep 13, 2023

• feat: postprocess parameter parsing

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• feat: overwrite option for predict & postprocess

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Commits on Sep 14, 2023

• bugfix!?: removed odd zarr creation

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Commits on Sep 15, 2023

• !: attempts to fix roi mismatch failed.

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• bugfix: prediction works with zarrs

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Commits on Sep 20, 2023

• feat: backlogged updates and wip

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Commits on Sep 21, 2023

• feat: zarr fix dimension detection, simple augment config kwargs, validation bug hanging

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• bugfix: simple augment config

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• bugfix: simple augment config

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Commits on Sep 25, 2023

• feat: black format, iou score

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• bugfix: remove array overspecification

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• hot distance loss function

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• feat: hotdistance predictor, model/target

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• hot distance task

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• Merge branch 'hot_distance' of github.com:janelia-cellmap/dacapo into hot_distance

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• feat: hot_distance_predictor target/weight

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Commits on Sep 26, 2023

• bugfix: temporarily remove IOU

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Commits on Sep 28, 2023

• feat: avg_iou

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Commits on Oct 10, 2023

• feat: revert weighting, add torch.compile(model)

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• bugfix: revert torch.compile addition

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Commits on Oct 11, 2023

• feat: handling buggy iou evaluation

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Commits on Oct 15, 2023

• fix use coord

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• fix use coord

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• weight cross class

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Commits on Oct 30, 2023

• start head matching

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Commits on Oct 31, 2023

• Merge branch 'mzouink' into rhoadesj/dev

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Commits on Nov 10, 2023

• fix: ✨ Add Marwan's start-setup, and remove reloading on validation.

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Commits on Feb 8, 2024

• Merge branch 'main' into rhoadesj/dev

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• Merge branch 'rhoadesj/dev' into merge_fix

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• 🎨 Format Python code with psf/black

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• Merge pull request #27 from janelia-cellmap/actions/black

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• Merge pull request #26 from janelia-cellmap/merge_fix

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